View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4470_high_1 (Length: 707)

Name: NF4470_high_1
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4470_high_1
NF4470_high_1
[»] chr5 (1 HSPs)
chr5 (5-691)||(26421781-26422464)


Alignment Details
Target: chr5 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 5 - 691
Target Start/End: Complemental strand, 26422464 - 26421781
Alignment:
Q  5 gatggacatcatcaaaattcccgcaaaacctgaagtaaagctcctcactcagaaaaaatttgtgcccatcatcaaaattccagcaactgactcctcccac 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  26422464 gatggccatcatcaaaattcccgcaaaacctgaagtaaagctcctcactcagaagaaatttgtgcccatcatcaaaattcccgcaactgactcctcccac 26422365  T
Q  105 ttgacaccactattctcatatcgcccttttcaattttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26422364 ttgacaccactattctcatatcgcccttttcaattttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagt 26422265  T
Q  205 tcttttttatccctaaaatattaatctttccctgaatgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagc 304  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26422264 tcttttttatccctaaaatattaatctgtccctgaatgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagc 26422165  T
Q  305 atcttctcatatagtctcttctatgaattgtctttcttaatgaataactaacttaggtgttttctccccctgttccacgatatttccagtaatcaattct 404  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||    
T  26422164 atcttctcatatagtctcttctatgaattgtctttctcaatgaataactaactta---gttttctccccctgttccacaatatttccagtaatcaattct 26422068  T
Q  405 tttaatgtcattccacacctgtgctctccacatccatcccctgagcgccacctgcctgaatttcagtcatgttcttgaggctggagtctaaaatttttaa 504  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26422067 tttaatgttattccacacctgtgctctccacatccatcccctgagcgccacctgcctgaatttcagtcatgttcttgaggctggagtctaaaatttttca 26421968  T
Q  505 aagcgtcttctcatatagtgtcctatagattgtctttccaaatgattaagtaatttgttgttctctgtccctattccacaatatatcaagcagccaatat 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26421967 aagcgtcttctcatatagtgtcctatagattgtctttccaaatgattaagtaatttgttgttctctgtccctattccacaatatatcaagcagccaatat 26421868  T
Q  605 tttccatgtgggtagatcctttataagagtgcatatttccacacaaggaaactcgagcttataagatactggatcaattctttctat 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26421867 tttccatgtgggtagatcctttataagagtgcatatttccacacaaggaaactcgagcttataagttactggatcaattctttctat 26421781  T

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