View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4470_high_10 (Length: 347)
Name: NF4470_high_10
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4470_high_10 |
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| [»] scaffold0068 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 10469337 - 10469029
Alignment:
| Q |
11 |
aatgagagagaaattgtttcatgaagagaaaaaggggaatttgtttcatcacaacttgcatgttagtaagctaaagtaacgtgttagagaatccaataat |
110 |
Q |
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| T |
10469337 |
aatgagagagaaattgtttcatgaagagaaaaaggggaatttgtttcatcacaacttgcatgttagtaagctag-----cgtgttagagaatccaataat |
10469243 |
T |
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| Q |
111 |
gagtaacatgtgtctagaaattcagtgagtgggtaacatatttttaaaatgtctaaatgctcaatatcccaaggataactataagttatagataaatgcc |
210 |
Q |
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| T |
10469242 |
gagtaacatgtgtcttgaaattcagtgagtgggtaacatatttttaaaatgtctaaatgctcaatatcccaaggataactataagttatagataaatgcc |
10469143 |
T |
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| Q |
211 |
taaatgtaattgaatgtacagattatttactaacattttaatgaagaaaaggaagcaactataccactgaataaataaagccacacttcagaatctgaat |
310 |
Q |
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| T |
10469142 |
taaatgtaattaaatgtacagattatttactaacattttaatgaa-taaataaagccacact-----tgaataaataaagccacacttgagaatctgaat |
10469049 |
T |
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| Q |
311 |
gcaaaaggaccaaagctagt |
330 |
Q |
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| T |
10469048 |
gcagaaggaccaaagctagt |
10469029 |
T |
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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 6717769 - 6717704
Alignment:
| Q |
54 |
tttcatcacaacttgcatgttagtaagctaaagtaacgtgttagagaatccaataatgagtaacat |
119 |
Q |
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| T |
6717769 |
tttcatcacaccttgcatgttagtaagctaaagtgacgtgttagagaatccaagaatgagtaacat |
6717704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 13513 - 13576
Alignment:
| Q |
188 |
actataagttatagataaatgcctaaatgtaattgaatgtacagattatttactaacattttaa |
251 |
Q |
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| T |
13513 |
actataagttatagataaatgcttaaatgcaatcgaaatcacaaattattttctaacattttaa |
13576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 28000 - 28064
Alignment:
| Q |
189 |
ctataagttatagataaatgcctaaatgtaattgaatgtacagattatttactaacattttaatg |
253 |
Q |
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| T |
28000 |
ctataagttatagataaatgcttaaatgcaatcgaaatcacaaattatattctaacattttaatg |
28064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 21700397 - 21700334
Alignment:
| Q |
188 |
actataagttatagataaatgcctaaatgtaattgaatgtacagattatttactaacattttaa |
251 |
Q |
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| T |
21700397 |
actataagttatagataaatgcttaaatgcaatcgaaatcacaaattattttctaacattttaa |
21700334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 21685910 - 21685846
Alignment:
| Q |
189 |
ctataagttatagataaatgcctaaatgtaattgaatgtacagattatttactaacattttaatg |
253 |
Q |
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| T |
21685910 |
ctataagttatagataaatgcttaaatgcaatcgaaatcacaaattatattctaacattttaatg |
21685846 |
T |
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