View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4470_high_17 (Length: 239)
Name: NF4470_high_17
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4470_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 23593414 - 23593634
Alignment:
| Q |
1 |
taattaacagagtatgccgagatttgaaattgagaaggagaaagaggaaagcctcaagaatcaccagtagcttagtctcggaatagaaaaactagattat |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
23593414 |
taattaacagagaatgccgagatttgaaattgagaaggagaaagaggaaagcctcaagaatcac-agtagctaagtctcggaatagaaaagctagattat |
23593512 |
T |
|
| Q |
101 |
tattgagttgaaataggtgaagttacaagcataaggaattttccatacccatgtcaatgggtcttgaatcttacaagcataagttacnnnnnnnncataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
23593513 |
tattgagttgaaataggtgaagttacaagcataaggaattttcgatacccatgtcaatgggtcttgaatcttacaagcataagttacaaaacaaacgtaa |
23593612 |
T |
|
| Q |
201 |
acaatggatttaagttcctttg |
222 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
23593613 |
acaatggatttaggttcctttg |
23593634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 51051028 - 51050886
Alignment:
| Q |
45 |
aggaaagcctcaagaatcaccagtagcttagtctcggaatagaaaaactagattattattgagttgaaataggtgaagttacaagcataaggaattttcc |
144 |
Q |
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|||||||||||||||||||| ||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51051028 |
aggaaagcctcaagaatcactagtagctaagtatgggaatagaaaagttagattattattgagttgaaataggtgaagttacaagcataaggaattttcg |
51050929 |
T |
|
| Q |
145 |
atacccatgtcaatgggtcttgaatcttacaagcataagttac |
187 |
Q |
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| T |
51050928 |
atacccatgtcaatgggtcttgaatcttacaagcataagttac |
51050886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 3788984 - 3788942
Alignment:
| Q |
99 |
attattgagttgaaataggtgaagttacaagcataaggaattt |
141 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| ||||| |
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|
| T |
3788984 |
attattgcgttgaaatgggtgaagttacaagcataagaaattt |
3788942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 28123779 - 28123905
Alignment:
| Q |
96 |
attattattgagttgaaataggtgaagttacaagcataaggaattttccatacccatgtcaatgggtcttgaatcttacaagcataagttacnnnnnnnn |
195 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| |
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| T |
28123779 |
attattattgagtttaaataggtgaagttacaagcataaggaatttttgatacctatctcaatgggtcttgaatcttacaagcataagttacaaaacaaa |
28123878 |
T |
|
| Q |
196 |
cataaacaatggatttaagttcctttg |
222 |
Q |
| |
|
||||||||||||||||| ||||||||| |
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|
| T |
28123879 |
cataaacaatggatttaggttcctttg |
28123905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 1487956 - 1487998
Alignment:
| Q |
99 |
attattgagttgaaataggtgaagttacaagcataaggaattt |
141 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
1487956 |
attattgagttgaaatgggtgaagttacaagcataagaaattt |
1487998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 50306022 - 50306064
Alignment:
| Q |
99 |
attattgagttgaaataggtgaagttacaagcataaggaattt |
141 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| ||||| |
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|
| T |
50306022 |
attattgcgttgaaatgggtgaagttacaagcataagaaattt |
50306064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 26021410 - 26021452
Alignment:
| Q |
99 |
attattgagttgaaataggtgaagttacaagcataaggaattt |
141 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| ||||| |
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|
| T |
26021410 |
attattgcgttgaaatgggtgaagttacaagcataagaaattt |
26021452 |
T |
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