View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4470_high_18 (Length: 236)
Name: NF4470_high_18
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4470_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42801882 - 42801659
Alignment:
| Q |
1 |
agtcacgtattgttcctatcctgacctgtctcaatttgaattaaaaattaaaaataatgttacttgactgtctaaactagataatgatattatttctatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42801882 |
agtcacgtattgttcctatcctgacctgtctcaatttgaattaaaaattaaaaataatgttacttgactgtctaaactagataatgatattatttctatc |
42801783 |
T |
|
| Q |
101 |
ttcaatagtaatagattgacacgccatctccatctccacatcacagtgagagtgagcgttatcagtgactcgatatcaataat----tatgtactcagct |
196 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42801782 |
ttcaata-taatagattgacacgccatctccatctccacatcacagtgagagtgagcgttatcagtgactcgatatcaataattatgtatgtactcagct |
42801684 |
T |
|
| Q |
197 |
caaacaaatacaagcataacctaac |
221 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42801683 |
caaacaaatacaagcataacctaac |
42801659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University