View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4470_high_21 (Length: 228)

Name: NF4470_high_21
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4470_high_21
NF4470_high_21
[»] chr8 (8 HSPs)
chr8 (9-97)||(26938957-26939045)
chr8 (12-89)||(24916134-24916211)
chr8 (9-90)||(12596847-12596928)
chr8 (9-89)||(17153532-17153612)
chr8 (12-65)||(26938701-26938754)
chr8 (9-42)||(2414912-2414945)
chr8 (9-89)||(17157071-17157151)
chr8 (9-65)||(33695140-33695196)
[»] chr1 (4 HSPs)
chr1 (180-228)||(23231041-23231089)
chr1 (9-42)||(20985969-20986002)
chr1 (9-62)||(29307681-29307734)
chr1 (9-42)||(50919374-50919407)
[»] chr7 (4 HSPs)
chr7 (9-99)||(27567760-27567850)
chr7 (8-92)||(30851729-30851812)
chr7 (9-42)||(34471264-34471297)
chr7 (9-89)||(11297752-11297832)
[»] chr2 (6 HSPs)
chr2 (8-90)||(37284275-37284357)
chr2 (9-62)||(29242655-29242708)
chr2 (9-71)||(855577-855639)
chr2 (9-65)||(6191108-6191164)
chr2 (9-89)||(24490646-24490726)
chr2 (11-62)||(10077626-10077676)
[»] chr6 (7 HSPs)
chr6 (9-85)||(10311636-10311712)
chr6 (9-90)||(17158516-17158597)
chr6 (8-92)||(30465250-30465333)
chr6 (12-91)||(3807061-3807140)
chr6 (9-89)||(25042928-25043007)
chr6 (9-51)||(24672302-24672344)
chr6 (9-86)||(17957027-17957104)
[»] scaffold0233 (1 HSPs)
scaffold0233 (9-87)||(17017-17095)
[»] chr3 (5 HSPs)
chr3 (11-88)||(34359326-34359403)
chr3 (9-90)||(20336774-20336855)
chr3 (9-86)||(44446946-44447023)
chr3 (9-89)||(39340765-39340845)
chr3 (30-90)||(52423197-52423257)
[»] chr4 (3 HSPs)
chr4 (9-89)||(15882225-15882305)
chr4 (9-87)||(40390886-40390964)
chr4 (9-42)||(38377849-38377882)
[»] scaffold0478 (2 HSPs)
scaffold0478 (9-89)||(3216-3296)
scaffold0478 (9-89)||(8594-8674)
[»] scaffold0020 (1 HSPs)
scaffold0020 (9-65)||(152264-152320)
[»] chr5 (1 HSPs)
chr5 (9-89)||(26724105-26724185)
[»] scaffold1911 (1 HSPs)
scaffold1911 (9-62)||(2-55)
[»] scaffold0264 (1 HSPs)
scaffold0264 (9-62)||(19820-19873)
[»] scaffold0005 (1 HSPs)
scaffold0005 (9-65)||(253839-253895)


Alignment Details
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 26938957 - 26939045
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccctaaaaagta 97  Q
    |||||||||||||||||||| ||||||||||||| | |||||||| || ||||||||  |||| |||  ||||||||||||||||||||    
T  26938957 actaaaattaccattaaaattttatagggactaaacttgaaaacttatgattttatagggactaaaagcatatttaaccctaaaaagta 26939045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 24916134 - 24916211
Alignment:
Q  12 aaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccct 89  Q
    ||||||||||||||||| ||||||||||||| | | ||||||||| ||||||||  |||| |||| ||||||||||||    
T  24916134 aaaattaccattaaaattttatagggactaaacttaaaaactcatgattttatatggactaaaaacatatttaaccct 24916211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 12596928 - 12596847
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaacccta 90  Q
    |||||||||||||||||||| ||||||||||||| | | |||||| || ||||| ||  |||| |||| |||||||||||||    
T  12596928 actaaaattaccattaaaattttatagggactaaacttaaaaacttatgattttgtagagactaaaaacatatttaacccta 12596847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 17153612 - 17153532
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccct 89  Q
    |||||||||||||||||||| | ||||||||||| | | ||||||||| ||||| ||  |||| |||| ||||||||||||    
T  17153612 actaaaattaccattaaaatttcatagggactaagcttaaaaactcatgattttgtagggactaaaaacatatttaaccct 17153532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 26938701 - 26938754
Alignment:
Q  12 aaaattaccattaaaatattatagggactaatcatgaaaactcataattttata 65  Q
    ||||||||||||||||| ||||||||||||| | |||||||| || ||||||||    
T  26938701 aaaattaccattaaaattttatagggactaaacttgaaaacttatgattttata 26938754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 2414945 - 2414912
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaa 42  Q
    |||||||||||||||||||| |||||||||||||    
T  2414945 actaaaattaccattaaaattttatagggactaa 2414912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 17157071 - 17157151
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccct 89  Q
    |||||||||||||||||||| | |||||||||||   | |||| |||| ||||| ||  |||| |||| ||||||||||||    
T  17157071 actaaaattaccattaaaatttcatagggactaagtttaaaaaatcatgattttgtagggactaaaaacatatttaaccct 17157151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 33695196 - 33695140
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttata 65  Q
    |||||||||| ||||||| | |||||  |||||| | ||||||||||||||||||||    
T  33695196 actaaaattatcattaaagttttataaagactaaacttgaaaactcataattttata 33695140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 23231041 - 23231089
Alignment:
Q  180 acctcgctttcaaaactttgattaagaaataatatacgtaattttcata 228  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23231041 acctcgctttcaaaactttgattaagaaataatatatgtaattttcata 23231089  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 20986002 - 20985969
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaa 42  Q
    |||||||||||||||||||| |||||||||||||    
T  20986002 actaaaattaccattaaaattttatagggactaa 20985969  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 29307681 - 29307734
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataatttt 62  Q
    ||||||||||| |||||||| ||||||||||||| | | ||||||||| |||||    
T  29307681 actaaaattacaattaaaatcttatagggactaaacttaaaaactcatgatttt 29307734  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 50919374 - 50919407
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaa 42  Q
    |||||||||||||||||||| |||||||||||||    
T  50919374 actaaaattaccattaaaattttatagggactaa 50919407  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 27567760 - 27567850
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccctaaaaagtatg 99  Q
    |||||||||||||||||||| ||||||||| ||| | | ||||||||| ||||| ||  |||| |||| ||||||||||||||||| ||||    
T  27567760 actaaaattaccattaaaattttatagggaataaactttaaaactcatgattttgtagggactaaaaatatatttaaccctaaaaaatatg 27567850  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 30851729 - 30851812
Alignment:
Q  8 aactaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccctaaa 92  Q
    ||||||||||||||||||||| |||||||  ||||   ||||||||| ||||||||| | ||  ||||||||||||||| |||||    
T  30851729 aactaaaattaccattaaaattttataggatctaaagttgaaaactcttaattttat-aggaactaaaaaatatttaacactaaa 30851812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 34471297 - 34471264
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaa 42  Q
    |||||||||||||||||||| |||||||||||||    
T  34471297 actaaaattaccattaaaattttatagggactaa 34471264  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 11297832 - 11297752
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccct 89  Q
    |||||||||||||||||||| | ||||| ||||| | | ||||||||| ||||| ||  || | |||| ||||||||||||    
T  11297832 actaaaattaccattaaaatttcataggaactaagcttaaaaactcattattttgtagggaataaaaacatatttaaccct 11297752  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 37284275 - 37284357
Alignment:
Q  8 aactaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaacccta 90  Q
    ||||||||| | ||||||||| ||||||||||||| | | ||||||||||||||| ||| |||| |||| |||||||||||||    
T  37284275 aactaaaatcatcattaaaattttatagggactaaacttaaaaactcataattttgtaaggactaaaaatatatttaacccta 37284357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 29242655 - 29242708
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataatttt 62  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||| |||||||    
T  29242655 actaaaattaccattaaaattttatagggactaaacttgaaaactcctaatttt 29242708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 855639 - 855577
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgact 71  Q
    |||||||||||||||||||| ||||||||||||| | | ||||||||| ||||| ||| ||||    
T  855639 actaaaattaccattaaaattttatagggactaaacttaaaaactcatgattttgtaaggact 855577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 6191164 - 6191108
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttata 65  Q
    |||||||||||||||||||| ||||||||||||| | |||| ||| || ||||||||    
T  6191164 actaaaattaccattaaaattttatagggactaaacttgaatactaatgattttata 6191108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 24490646 - 24490726
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccct 89  Q
    ||||||||||| |||||||| |||||| |||||| | | ||||| ||||||||| ||  |||| |||| ||||||||||||    
T  24490646 actaaaattactattaaaattttatagagactaaacttaaaaacacataattttgtagggactaaaaacatatttaaccct 24490726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 10077676 - 10077626
Alignment:
Q  11 taaaattaccattaaaatattatagggactaatcatgaaaactcataatttt 62  Q
    |||||||||||||||||| ||||||||||||| | ||||||||||| |||||    
T  10077676 taaaattaccattaaaat-ttatagggactaaacttgaaaactcatgatttt 10077626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 10311712 - 10311636
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaa 85  Q
    |||||||||||||||||||| ||||||| |||||   ||||||||| | ||||||||| ||||||||| ||||||||    
T  10311712 actaaaattaccattaaaattttataggaactaaatttgaaaactcgtgattttataaggacttaaaacatatttaa 10311636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 17158516 - 17158597
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaacccta 90  Q
    ||||||||||| |||||||| || |||||||| | | ||||||||||||||||||||  |||| |||| |||| ||||||||    
T  17158516 actaaaattactattaaaatgttgtagggactcaacgtgaaaactcataattttatagggactaaaaacatatctaacccta 17158597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 30465250 - 30465333
Alignment:
Q  8 aactaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccctaaa 92  Q
    ||||||||||||||||||||| |||||||  ||||   ||||||||| ||||||||||  ||| ||||||||||||||| |||||    
T  30465250 aactaaaattaccattaaaattttataggatctaaagttgaaaactcttaattttatagggac-taaaaaatatttaacactaaa 30465333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 3807140 - 3807061
Alignment:
Q  12 aaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccctaa 91  Q
    ||||||||||||||||| |||||| |||||| ||| |||||| || ||||||||  |||| |||| ||||||||| ||||    
T  3807140 aaaattaccattaaaattttatagagactaaacataaaaacttatgattttatagggactaaaaacatatttaactctaa 3807061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 25042928 - 25043007
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccct 89  Q
    |||||||||||||||||||| ||||| |||||||   ||||||||||| ||||| ||  |||| |||| ||||||||||||    
T  25042928 actaaaattaccattaaaattttata-ggactaaatttgaaaactcatgattttgtagggactaaaaacatatttaaccct 25043007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 24672344 - 24672302
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaa 51  Q
    |||||||||||||||||||| ||||||||||||| | ||||||    
T  24672344 actaaaattaccattaaaattttatagggactaaacttgaaaa 24672302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 17957104 - 17957027
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaac 86  Q
    ||||||||||| |||||||| |||| || ||||| | | ||||||||||||| ||||  |||| |||| |||||||||    
T  17957104 actaaaattacaattaaaattttattggaactaaacttaaaaactcataattatatagggactaaaaacatatttaac 17957027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 17017 - 17095
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaacc 87  Q
    |||||||||||||||||||| ||||||||| ||| | ||||||||| | ||||||||  |||| |||| ||||||||||    
T  17017 actaaaattaccattaaaattttatagggattaaacctgaaaactcgtgattttatagggactaaaaacatatttaacc 17095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 34359403 - 34359326
Alignment:
Q  11 taaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccc 88  Q
    |||||||||||||||||| ||||| ||||||| | | ||||||||| ||||| ||| |||| |||| |||||||||||    
T  34359403 taaaattaccattaaaattttatatggactaaacttaaaaactcatgattttgtaaggactaaaaacatatttaaccc 34359326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 20336855 - 20336774
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaacccta 90  Q
    |||||||||||||||||||| ||||| |||||||   ||||||||| | ||||| ||  |||| |||| |||||||||||||    
T  20336855 actaaaattaccattaaaattttataaggactaaagttgaaaactcttgattttgtagggactaaaaacatatttaacccta 20336774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 44446946 - 44447023
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaac 86  Q
    ||||||||||| |||||||| |||| |||| ||| | | ||||||||||||| ||||  |||| |||| |||||||||    
T  44446946 actaaaattacaattaaaattttattgggattaaacttaaaaactcataattatatagggactaaaaacatatttaac 44447023  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 39340845 - 39340765
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccct 89  Q
    |||||||||||||||||||  ||||||||||||| | | ||||||  | ||||| ||  |||| |||| ||||||||||||    
T  39340845 actaaaattaccattaaaactttatagggactaaacttaaaaactagtgattttgtagggactcaaaacatatttaaccct 39340765  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 52423197 - 52423257
Alignment:
Q  30 ttatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaacccta 90  Q
    ||||||||| ||| |||||||||| |||||||| ||  |||| |||| |||||||||||||    
T  52423197 ttatagggattaaacatgaaaacttataattttgtagggactaaaaacatatttaacccta 52423257  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 15882225 - 15882305
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccct 89  Q
    |||||||||||||||||||| | ||||||||||| | | ||||||||| ||||| ||  |||| |||| ||||||||||||    
T  15882225 actaaaattaccattaaaatttcatagggactaagcttaaaaactcatgattttgtagggactaaaaacatatttaaccct 15882305  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 40390964 - 40390886
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaacc 87  Q
    |||||||||| ||||||||| ||||||| ||||| | ||||||||||| ||||| ||  |||| |||| ||||||||||    
T  40390964 actaaaattatcattaaaattttataggaactaaacttgaaaactcatgattttgtagggactaaaaacatatttaacc 40390886  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 38377882 - 38377849
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaa 42  Q
    |||||||||||||||||||| |||||||||||||    
T  38377882 actaaaattaccattaaaattttatagggactaa 38377849  T

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Target: scaffold0478 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 3296 - 3216
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccct 89  Q
    |||||||||||||||||||| | ||||||| ||| | | ||||||||| ||||| ||  |||| |||| ||||||||||||    
T  3296 actaaaattaccattaaaatttcatagggattaagcttaaaaactcatgattttgtagggactaaaaacatatttaaccct 3216  T

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Target: scaffold0478; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 8674 - 8594
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccct 89  Q
    |||||||||||||||||||| | || |||||||| | | ||||||||| ||||| ||  |||| |||| ||||||||||||    
T  8674 actaaaattaccattaaaatttcattgggactaagcttaaaaactcatgattttttagggactaaaaacatatttaaccct 8594  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 152264 - 152320
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttata 65  Q
    |||||||||||||||||||| |||||  |||||| | |||||| |||||||||||||    
T  152264 actaaaattaccattaaaattttataaagactaaacttgaaaattcataattttata 152320  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 26724185 - 26724105
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttataatgacttaaaaaatatttaaccct 89  Q
    |||||||||||||||||||| ||||||||||||| |  |||||||| | ||||| ||  |||| |||| ||||||| ||||    
T  26724185 actaaaattaccattaaaattttatagggactaaactcgaaaactcgtgattttgtagggactaaaaacatatttatccct 26724105  T

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Target: scaffold1911 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 55 - 2
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataatttt 62  Q
    |||||||||||||||||||| | ||||||||||| | | ||||||||| |||||    
T  55 actaaaattaccattaaaatttcatagggactaagcttaaaaactcatgatttt 2  T

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Target: scaffold0264 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 19820 - 19873
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataatttt 62  Q
    |||||||||||| ||||||| ||||||||||||| ||| |||| |||| |||||    
T  19820 actaaaattaccgttaaaattttatagggactaaacataaaaattcatgatttt 19873  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 253839 - 253895
Alignment:
Q  9 actaaaattaccattaaaatattatagggactaatcatgaaaactcataattttata 65  Q
    ||||||||||| |||||||| ||||| | ||||| | | ||||||||||||||||||    
T  253839 actaaaattactattaaaattttatatgaactaaacttaaaaactcataattttata 253895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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