View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4470_low_12 (Length: 340)
Name: NF4470_low_12
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4470_low_12 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 35234287 - 35234605
Alignment:
| Q |
18 |
ctatgcaattagggccacagggnnnnnnnnccttcataaatcaagccacactatcctatgtcatgcgataacttataaaatgccctaattcgcctccaat |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35234287 |
ctatgcaattagggccacaggtttttttttccttcataaatcaagccacactatcctatgtcatgcgataacttataaaatgccctaattcgcctccaat |
35234386 |
T |
|
| Q |
118 |
atttcacagaatttctttggaagtaaacaaaagttgcttatgaatttgcaagtacatacatggttctgttactatactatatatctgtataagggaacta |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35234387 |
atttcacagaatttctttggaagtaagcaaaagttgcttatgaatttgcaagtacatacatggttctgttactatactatatatctgtataagggaacta |
35234486 |
T |
|
| Q |
218 |
tattttatttctttaccttgccttcatcaaccaattactgtgtaaaagaaggaagagattaggctgtatcggtttaatttttcaaggattatatatatta |
317 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
35234487 |
tattttatttccttaccttgccttcatcaaccaattactgtgtaaaagaaggaagagattaggctgtatcggtttaatttttcaaggat----tatgtta |
35234582 |
T |
|
| Q |
318 |
aaatatattcttattttcctatg |
340 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35234583 |
aaatatattcttattttcctatg |
35234605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University