View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4470_low_14 (Length: 254)

Name: NF4470_low_14
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4470_low_14
NF4470_low_14
[»] chr1 (7 HSPs)
chr1 (36-138)||(24976665-24976767)
chr1 (36-139)||(51976263-51976366)
chr1 (90-141)||(38618227-38618278)
chr1 (90-138)||(50354996-50355044)
chr1 (89-138)||(29334946-29334995)
chr1 (90-138)||(51610221-51610269)
chr1 (71-108)||(17151031-17151068)
[»] chr2 (6 HSPs)
chr2 (36-139)||(6851911-6852014)
chr2 (37-138)||(26893482-26893583)
chr2 (37-138)||(26898921-26899022)
chr2 (90-138)||(6852809-6852857)
chr2 (90-138)||(26487845-26487893)
chr2 (90-138)||(8536886-8536934)
[»] chr4 (6 HSPs)
chr4 (36-138)||(23574563-23574665)
chr4 (90-138)||(20681722-20681770)
chr4 (90-132)||(53664218-53664260)
chr4 (90-133)||(50710417-50710460)
chr4 (89-138)||(55511902-55511951)
chr4 (98-138)||(53665094-53665134)
[»] chr7 (7 HSPs)
chr7 (84-138)||(5004188-5004242)
chr7 (90-141)||(34852554-34852605)
chr7 (89-132)||(46814246-46814289)
chr7 (89-139)||(42344213-42344263)
chr7 (84-138)||(30916490-30916544)
chr7 (90-138)||(34853334-34853382)
chr7 (97-138)||(42343296-42343337)
[»] chr5 (5 HSPs)
chr5 (84-133)||(18153428-18153477)
chr5 (90-138)||(7495257-7495305)
chr5 (90-138)||(43589162-43589210)
chr5 (89-139)||(32402189-32402239)
chr5 (89-138)||(42993199-42993248)
[»] chr8 (6 HSPs)
chr8 (90-138)||(33802373-33802421)
chr8 (90-139)||(38686302-38686351)
chr8 (89-138)||(42638148-42638197)
chr8 (90-138)||(33801499-33801547)
chr8 (90-133)||(38687055-38687098)
chr8 (90-136)||(32551108-32551154)
[»] chr3 (5 HSPs)
chr3 (89-139)||(35432220-35432270)
chr3 (84-138)||(44406197-44406251)
chr3 (92-138)||(47480507-47480553)
chr3 (89-138)||(7359841-7359890)
chr3 (97-133)||(35431337-35431373)
[»] chr6 (4 HSPs)
chr6 (89-139)||(20687463-20687513)
chr6 (90-138)||(19063660-19063708)
chr6 (97-138)||(20689063-20689104)
chr6 (89-129)||(10606343-10606383)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 24976665 - 24976767
Alignment:
Q  36 ttgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtc 135  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |    
T  24976665 ttgagggtccactataaaagtgtgctctctatttgatctagaggtcaaaaagtgactttcccatggtggaaaagaattcctcctacccaccctaaatgcc 24976764  T
Q  136 acc 138  Q
    |||    
T  24976765 acc 24976767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 51976366 - 51976263
Alignment:
Q  36 ttgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtc 135  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||| |    
T  51976366 ttgagggtccactataaaagtgtgctctctatttgatctagaggtcgaaaagtgacttttccatggtggaaaagaattcctcctacccaccctaaatgcc 51976267  T
Q  136 accc 139  Q
    ||||    
T  51976266 accc 51976263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 38618278 - 38618227
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccctc 141  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38618278 actttcccatggtgggaaagaattcctcctacccaccctaaatgccaccctc 38618227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 50354996 - 50355044
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50354996 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 50355044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 29334946 - 29334995
Alignment:
Q  89 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  29334946 gactttcccatggtgggaaataattcctcctacccaccctaaatgacacc 29334995  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 51610221 - 51610269
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  51610221 actttcccatggtgggaaaatattcctcctacccaccctaaatgccacc 51610269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 17151068 - 17151031
Alignment:
Q  71 atctagaggtcaaaaaatgactttcccatggtgggaaa 108  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  17151068 atctagtggtcaaaaaataactttcccatggtgggaaa 17151031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 6852014 - 6851911
Alignment:
Q  36 ttgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtc 135  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| |    
T  6852014 ttgagggtccactataaaagtgtgctctctatttgatctagaggtcgaaaagtgactttcccatgatgggaaagaattcctcctacccaccctaaatgcc 6851915  T
Q  136 accc 139  Q
    ||||    
T  6851914 accc 6851911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 26893583 - 26893482
Alignment:
Q  37 tgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtca 136  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||| ||    
T  26893583 tgagggtccactataaaagtgtgctctctatttgatctagaggtcgaaaagtgcctttcccatggtgggaaagaattccttctacccaccctaaatgcca 26893484  T
Q  137 cc 138  Q
    ||    
T  26893483 cc 26893482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 26899022 - 26898921
Alignment:
Q  37 tgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtca 136  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||| ||    
T  26899022 tgagggtccactataaaagtgtgctctctatttgatctagaggtcgaaaagtgcctttcccatggtgggaaagaattccttctacccaccctaaatgcca 26898923  T
Q  137 cc 138  Q
    ||    
T  26898922 cc 26898921  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 6852809 - 6852857
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  6852809 actttcctatggtgggaaagaattcctcctacccaccctaaatgccacc 6852857  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 26487845 - 26487893
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||| |||||| |||||||||||||||||||||||||||||| ||||    
T  26487845 actttctcatggtaggaaagaattcctcctacccaccctaaatgccacc 26487893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 8536886 - 8536934
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||| ||||    
T  8536886 acttttccatggtaggaaagaattccttctacccaccctaaatgccacc 8536934  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 23574563 - 23574665
Alignment:
Q  36 ttgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtc 135  Q
    ||||| |||||||||||||||||||||| |||||||||||||| || |||| ||||||| ||||||||||||||||||||||||| |||||||||||| |    
T  23574563 ttgagggtccactataaaagtgtgctctttatttgatctagagatcgaaaagtgacttttccatggtgggaaagaattcctcctatccaccctaaatgcc 23574662  T
Q  136 acc 138  Q
    |||    
T  23574663 acc 23574665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 20681770 - 20681722
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  20681770 actttcccatagtgggaaagaattcctcctacccaccctaaatgccacc 20681722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 53664260 - 53664218
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaat 132  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  53664260 actttcccatggtgggaaagaattccttctacccaccctaaat 53664218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 50710417 - 50710460
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatg 133  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||    
T  50710417 actttcccatggtgggaaagaattccttctacccaccttaaatg 50710460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 55511951 - 55511902
Alignment:
Q  89 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  55511951 gactttcctatggtgggaaagtattcctcctacctaccctaaatgccacc 55511902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 53665094 - 53665134
Alignment:
Q  98 atggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  53665094 atggtgggaaagaattccttctacccaccctaaatgccacc 53665134  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 5004242 - 5004188
Alignment:
Q  84 aaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  5004242 aaaaagactttcccatggtggaaaagaattcctcctacccatcctaaatgtcacc 5004188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 34852605 - 34852554
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccctc 141  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  34852605 actttcccatggtggaaaagaattccttctacccaccctaaatgccaccctc 34852554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 46814246 - 46814289
Alignment:
Q  89 gactttcccatggtgggaaagaattcctcctacccaccctaaat 132  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  46814246 gactttcccatggtgggaaagaattcctcctacccatcctaaat 46814289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 42344213 - 42344263
Alignment:
Q  89 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccc 139  Q
    |||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  42344213 gacttttctatggtgggaaagaattcctcctacccaccctaaatgccaccc 42344263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 30916490 - 30916544
Alignment:
Q  84 aaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||| |||||| ||||| ||||||||||||| |||||||||||||||||| ||||    
T  30916490 aaaaagacttttccatgatgggaaagaattcttcctacccaccctaaatgccacc 30916544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 34853334 - 34853382
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    ||||||| ||||||||||||  |||||||||||||||||||||| ||||    
T  34853334 actttcctatggtgggaaagtcttcctcctacccaccctaaatgccacc 34853382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 42343337 - 42343296
Alignment:
Q  97 catggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||| |||||| ||||||||||||||||||||||| ||||    
T  42343337 catggtaggaaagtattcctcctacccaccctaaatgccacc 42343296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 18153428 - 18153477
Alignment:
Q  84 aaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatg 133  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  18153428 aaaaagactttcccatggtggaaaagaattcctcctacccaccctaaatg 18153477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 7495257 - 7495305
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  7495257 actttctcatggtgggaaagaattccccctacccaccctaaatgtcacc 7495305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 43589162 - 43589210
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  43589162 actttcccatagtgggaaagaattcctcctacccaccctaaatgccacc 43589210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 32402239 - 32402189
Alignment:
Q  89 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccc 139  Q
    |||||||||||||||||||||  |||||||||||||| ||||||| |||||    
T  32402239 gactttcccatggtgggaaagtcttcctcctacccactctaaatggcaccc 32402189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 42993199 - 42993248
Alignment:
Q  89 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||| ||||    
T  42993199 gacttttccatggtgggatagaattccttctacccaccctaaatgccacc 42993248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 33802373 - 33802421
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  33802373 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 33802421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 38686351 - 38686302
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccc 139  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  38686351 actttcccatggtggaaaagaattccttctacccaccctaaatgccaccc 38686302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 42638197 - 42638148
Alignment:
Q  89 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    ||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  42638197 gactttctcatggtggaaaagaattcctcctacccaccctaaatgccacc 42638148  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 33801547 - 33801499
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  33801547 acttttccatggtgggaaagaattccttctacccaccctaaatgccacc 33801499  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 38687055 - 38687098
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatg 133  Q
    |||||||||| |||||||||||||||| ||||||||||||||||    
T  38687055 actttcccattgtgggaaagaattccttctacccaccctaaatg 38687098  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 32551108 - 32551154
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtca 136  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  32551108 actttcctatgatgggaaagaattccttctacccaccctaaatgtca 32551154  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 35432220 - 35432270
Alignment:
Q  89 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccc 139  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  35432220 gacttttccatggtgggaaagaattccttctacccaccctaaatgccaccc 35432270  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 44406251 - 44406197
Alignment:
Q  84 aaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  44406251 aaaaagacttttccatggtgggaaagaattcttcctacccaccctaaatgccacc 44406197  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 47480553 - 47480507
Alignment:
Q  92 tttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||||    
T  47480553 tttctcatggtggaaaataattcctcctacccaccctaaatgtcacc 47480507  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 7359841 - 7359890
Alignment:
Q  89 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||||||||||||||||||  |||||| ||||||||||||||| ||||    
T  7359841 gactttcccatggtgggaaagtcttcctcttacccaccctaaatgccacc 7359890  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 35431373 - 35431337
Alignment:
Q  97 catggtgggaaagaattcctcctacccaccctaaatg 133  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35431373 catggtgggaaagtattcctcctacccaccctaaatg 35431337  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 20687513 - 20687463
Alignment:
Q  89 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccc 139  Q
    |||||||| |||||||||||| |||||||||||| |||||||||| |||||    
T  20687513 gactttcctatggtgggaaagtattcctcctacctaccctaaatgccaccc 20687463  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 19063708 - 19063660
Alignment:
Q  90 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    ||||||||||||| |||||| ||||||||||||||||| ||||| ||||    
T  19063708 actttcccatggttggaaagtattcctcctacccacccaaaatgccacc 19063660  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 20689063 - 20689104
Alignment:
Q  97 catggtgggaaagaattcctcctacccaccctaaatgtcacc 138  Q
    |||||| |||||| ||||||||||||||||||||||| ||||    
T  20689063 catggtaggaaagtattcctcctacccaccctaaatgccacc 20689104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 10606383 - 10606343
Alignment:
Q  89 gactttcccatggtgggaaagaattcctcctacccacccta 129  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  10606383 gactttcttatggtggaaaagaattcctcctacccacccta 10606343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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