View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4470_low_16 (Length: 240)
Name: NF4470_low_16
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4470_low_16 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 1053209 - 1052991
Alignment:
| Q |
18 |
atagtaagttaaactaaagagtaaaattcaaagtaggaaaaatgttagagatgtcatacgtacctttgtaacaatttttatctctctaatttacgtcatt |
117 |
Q |
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| T |
1053209 |
atagtaagttaaactaaagagtaaaattcaaagtagaaaaaatgttagagatgtcatac----ctttgtaacaatttttatctctctaatttacgtcatt |
1053114 |
T |
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| Q |
118 |
atttctgttcatacttttaaattgaatcaattgaactatggagaaatttaagaaaaatgaatttaccagcttcaatagcatttcttgcagcaagtctaaa |
217 |
Q |
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| T |
1053113 |
atttctgttcatacttttaaattgaatcaattgaactatggagaaatttaagaaaaatgaatttaccagcttcaatagcatttcttgcagcaagtctaaa |
1053014 |
T |
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| Q |
218 |
gtcattgacaatattaggaattt |
240 |
Q |
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| T |
1053013 |
gtcattgacaatattaggaattt |
1052991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 1046396 - 1046331
Alignment:
| Q |
175 |
tgaatttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaattt |
240 |
Q |
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| T |
1046396 |
tgaagttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaattt |
1046331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 1065451 - 1065391
Alignment:
| Q |
180 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaattt |
240 |
Q |
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| T |
1065451 |
ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaatgttaggaattt |
1065391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 1033453 - 1033393
Alignment:
| Q |
180 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaattt |
240 |
Q |
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| T |
1033453 |
ttaccagcttcaatagcatttcttgcagcgagtctgaagtcatttacaatattaggaattt |
1033393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 1043845 - 1043785
Alignment:
| Q |
180 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaattt |
240 |
Q |
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| T |
1043845 |
ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaattt |
1043785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 1058387 - 1058339
Alignment:
| Q |
180 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaa |
228 |
Q |
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| T |
1058387 |
ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaa |
1058339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 1071190 - 1071130
Alignment:
| Q |
180 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaattt |
240 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||| |
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| T |
1071190 |
ttaccagcttcaatagcatttcttgcagcgagtctgaagtcattgacaatgtttggaattt |
1071130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 1641080 - 1641140
Alignment:
| Q |
180 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaattt |
240 |
Q |
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||||||||| | |||||||| |||||||||||||| ||||||||||| ||| |||||||| |
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| T |
1641080 |
ttaccagctgctatagcattccttgcagcaagtctgaagtcattgacgatacgaggaattt |
1641140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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