View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4470_low_19 (Length: 231)
Name: NF4470_low_19
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4470_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13731416 - 13731193
Alignment:
| Q |
1 |
gaaggggacaatatggtaataggtgtaggattgaaaatatgagtagggctgtaagaaggaatagaaggagttggagatgcaggtgacaaaataggagact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13731416 |
gaaggggacaatatggtaataggtgtaggattgaaaatatgagcagggttgtaagaaggaatagaaggagttggagatgcaggtgtcaaaataggagact |
13731317 |
T |
|
| Q |
101 |
gctaggaagaagtaggagagggtgagttctgaccagcagaaggtataggtgaatgaaaattggaagaggaatttgtagtggaatttggagaggtagtaga |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13731316 |
gctgggaagaagtaggagagggtgagttctgaccagcagaaggtataggtgaatgaaaattggaagaggaatttgtagtggaatttggagaggtagtaga |
13731217 |
T |
|
| Q |
201 |
gtttgtgggggatgatgatgatgt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13731216 |
gtttgtgggggatgatgatgatgt |
13731193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25229260 - 25229467
Alignment:
| Q |
1 |
gaaggggacaatatggtaataggtgtaggattgaaaatatgagtagggctgtaagaaggaatagaaggagttggagatgcaggtgacaaaataggagact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
25229260 |
gaaggggacaatatggtaataggtgtaggattgaaaatatgagtaggtctgtaagaaggaatagaaggagttggagatgcatgtgtcaaaataggagact |
25229359 |
T |
|
| Q |
101 |
gctaggaagaagtaggagagggtgagttctgaccagcagaaggtataggtgaatgaaaattggaagaggaatttgtagtggaatttggagaggtagtaga |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
25229360 |
gctgggaagaagtaggagagggtgagttctgaccagc---aggtataggtgaatgaaaattggaaga------------ggaatgcggagaggtagtaga |
25229444 |
T |
|
| Q |
201 |
gtttgtgggggatgatgatgatg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25229445 |
gtttgtgggggatgatgatgatg |
25229467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University