View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4470_low_4 (Length: 580)
Name: NF4470_low_4
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4470_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 571
Target Start/End: Complemental strand, 45178073 - 45177512
Alignment:
| Q |
16 |
aataattaccatgtacacagtggtaaatctaagtatagagattgtctcaattgtctatctcgtgttataaattttattttaataaccataatctttcgta |
115 |
Q |
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| T |
45178073 |
aataattaccatgtacacagtggtaaatctaagtatagagattgtctcaattgtctatctcgtgttataaattttattttaataaccataatctttcgta |
45177974 |
T |
|
| Q |
116 |
aatatactaagcttgtgtttattttcgcggcaagataacctataacatgccgaagcttgaaaatatagcttcgtaattacgaagaataaactcttcaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45177973 |
aatatactaagcttgtgtttattttcgcggcaag-taacctataacatgccgaagcttgaaaatatagcttcgtaattacgaagaataaactcttcaatt |
45177875 |
T |
|
| Q |
216 |
ttcaaagttaaagaatctactttctcgtgtcacgtagtaaatttgcatacataaatgacattgttgatgcgatcttgaaagaaattgcctagctgtgaac |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45177874 |
ttcaaagttaaaaaatctactttctcgtgtcacgtagtaaatttgcatacataaatgacattgttgatgcgatcttgaaagaaattgcctagttgtgaac |
45177775 |
T |
|
| Q |
316 |
tttagataagaaggaattaataatcagaaaaaactaattactacatggagtaacttaatactcacaagaagatgaattatcattgtgtttcaaactctta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45177774 |
tttagataagaaggaattaataatcagaaaaaactaattactacatggagtaacttaatactcacaagaagatgaattatcattgtgtttcaaactctta |
45177675 |
T |
|
| Q |
416 |
a-annnnnnnnnnnnnnncactcgagctggaccatttcattaacataacatgaatggtg-------ttgttattttgtagtaggnnnnnnnccatacagt |
507 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
45177674 |
acaatttgtttgatttttcactcgagctggaccatttcattaacataacatgaatggtgttgttaattgttattttgtagtaggaaaaaaaccatacagt |
45177575 |
T |
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| Q |
508 |
tgaatccataaatagtnnnnnnnnnctattataaatttacacagtagtaaccatacagtataat |
571 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45177574 |
tgaatccataaatag-aaaaaaaaactattataaatttacacagtagtaaccatacagtataat |
45177512 |
T |
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