View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4470_low_8 (Length: 382)
Name: NF4470_low_8
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4470_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 7e-71; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 1052199 - 1052350
Alignment:
| Q |
14 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtatttaattttatcaaatgagcaattaata-acatatttttctaatttttcaagt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
1052199 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtatttaattttatctaatgagcaattaattgacatatttttctaatttttcaagt |
1052298 |
T |
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| Q |
113 |
attacttttaggtgggaatgaaatttttgttagagatgatacttattttata |
164 |
Q |
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| T |
1052299 |
attacttttaggtgggaatgaaatttttgttagagatgatacttattttata |
1052350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 266 - 382
Target Start/End: Original strand, 1052870 - 1052986
Alignment:
| Q |
266 |
gtttatcaaccaaatgggcaagcaccaatatcttcaacagaccaactactcacaccacaaattgtaggtgatggatttcaaatgtcacaattcacataaa |
365 |
Q |
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|||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| || |
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| T |
1052870 |
gtttgtcaaccaaatgggcaagcaccaatatcttcaacaaacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac |
1052969 |
T |
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| Q |
366 |
caacgaggttaagaaca |
382 |
Q |
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| | |||| |||||||| |
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| T |
1052970 |
cgaggaggctaagaaca |
1052986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 1046210 - 1046305
Alignment:
| Q |
266 |
gtttatcaaccaaatgggcaagcaccaatatcttcaacagaccaactactcacaccacaaattgtaggtgatggatttcaaatgtcacaattcaca |
361 |
Q |
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| T |
1046210 |
gtttatcaaccaaatggacaagcaccaatatcttctacagacaaactactcacaccacgaattggaggcaatggtattgaaatatcacaattcaca |
1046305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 1032876 - 1032926
Alignment:
| Q |
14 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtattta |
64 |
Q |
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| T |
1032876 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtattta |
1032926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 1045975 - 1046130
Alignment:
| Q |
23 |
atttggcatgttggaagagtttctaattctagtatgtatttaattttatcaaatgagcaattaa-taacatatttttctaatttttcaagtattactttt |
121 |
Q |
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||||||| |||||| || |||||||||||| ||||| ||||| ||| ||||||| ||||||||| ||||| |||||| | ||||||| |||||| |||| |
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| T |
1045975 |
atttggcttgttggtagggtttctaattctggtatgcatttagtttaatcaaattagcaattaactaacaaattttt-tgatttttc-agtatt-ttttt |
1046071 |
T |
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| Q |
122 |
aggtgggaatgaaatttttgttagag-atgatacttattttatattcactagtttaatta |
180 |
Q |
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|||| ||||| ||||||||||| || |||||| || ||||| |||||||||||||||| |
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| T |
1046072 |
aggtaggaattgaatttttgttacagaatgata-ttgatttatgttcactagtttaatta |
1046130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 1043275 - 1043321
Alignment:
| Q |
5 |
ggtagattattctgtcagatttggcatgttggaagagtttctaattc |
51 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
1043275 |
ggtatatttttctgtcagatttggcatgttggaagagtttcaaattc |
1043321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 1071009 - 1071071
Alignment:
| Q |
266 |
gtttatcaaccaaatgggcaagcaccaatatcttcaacagaccaactactcacaccacaaatt |
328 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||| | | ||| | |||||||||| |
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| T |
1071009 |
gtttatcagccaaatgggcaagcaccaatatcttctacagacaagccactaaaaccacaaatt |
1071071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 1049579 - 1049625
Alignment:
| Q |
5 |
ggtagattattctgtcagatttggcatgttggaagagtttctaattc |
51 |
Q |
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|||| ||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
1049579 |
ggtatatttttctgtcaaatttggcatgttggaagagtttcaaattc |
1049625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 1065046 - 1065080
Alignment:
| Q |
17 |
tgtcagatttggcatgttggaagagtttctaattc |
51 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
1065046 |
tgtcagatttggcatgttggaagagtttctgattc |
1065080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 1058007 - 1058052
Alignment:
| Q |
14 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgt |
59 |
Q |
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||||||||||||||||| ||||||||||||||| || || |||||| |
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| T |
1058007 |
ttctgtcagatttggcacgttggaagagtttctgatactggtatgt |
1058052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 1070347 - 1070392
Alignment:
| Q |
14 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgt |
59 |
Q |
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|||||||| |||||||||||||||||||||||| || || |||||| |
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| T |
1070347 |
ttctgtcaaatttggcatgttggaagagtttctgatactggtatgt |
1070392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 1641259 - 1641227
Alignment:
| Q |
268 |
ttatcaaccaaatgggcaagcaccaatatcttc |
300 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
1641259 |
ttatcaaccaaatgggcaggcaccaatatcttc |
1641227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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