View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4471-Insertion-1 (Length: 1049)

Name: NF4471-Insertion-1
Description: NF4471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4471-Insertion-1
NF4471-Insertion-1
[»] chr8 (2 HSPs)
chr8 (7-915)||(33617054-33617963)
chr8 (919-972)||(33616974-33617030)


Alignment Details
Target: chr8 (Bit Score: 821; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 821; E-Value: 0
Query Start/End: Original strand, 7 - 915
Target Start/End: Complemental strand, 33617963 - 33617054
Alignment:
Q  7 acactgtctatacagacacttttgtttaacaagcatatttttagattaaattgactatataatgaaatgttcatttcagttatttactgatattggatcg 106  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  33617963 acactgtctatatagacacttttatttaacaagcatatttttagattaaattgattatataataaaatgttcatttcagttatttactgatattggatcg 33617864  T
Q  107 cacaaattggagaactaatatgctgacttcattactagtgccttacattttcttcagctttccagagtccttgtataattttttcaggtaatgtttaata 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33617863 cacaaattggagaactaatatgctgacttcattactagtgccttacattttcttcagctttccagagtccttgtataattttttcaggtaatgtttaata 33617764  T
Q  207 gtaattcttcatcatcctcctcttctttcacatttgagttctacactgaaaatttgtcgaaattttttattattttcagaggaggagttggaaaatggtt 306  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33617763 gtaatttttcatcatcctcctcttctttcacatttgagttctacactgaaaatttgtcgaaattttttattattttcagaggaggagttggaaaatggtt 33617664  T
Q  307 tgctttcgttgcagtcgtgttgaggcttttcttcaataaacattttcccggtatatgttttaattaattttaatcagctacatatgtataacagcattgg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33617663 tgctttcgttgcagtcgtgttgaggcttttcttcaataaacattttcccggtatatgttttaattaattttaatcagctacatatgtataacagcattgg 33617564  T
Q  407 tgcctagtttttcaaaactaacttgaattatatatattaatccatgcagattggttggagttgccaggatcaatggtccttcttttgacagtaacccctg 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33617563 tgcctagtttttcaaaactaacttgaattatatatattaatccatgcagattggttggagttgccaggatcaatagtccttcttttgacagtaacccctg 33617464  T
Q  507 acttgtttgctataaagtttaggaacaattggattggagtagcaattgatcttttcattggttgttacctgctacaagaacatattagagctactggtgg 606  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33617463 atttgtttgctataaagtttaggaacaattggattggagtagcaattgatcttttcattggttgttacctgctacaagaacatattagagctactggtgg 33617364  T
Q  607 attcagaaattctttcacacaaagacatggaatatctaacacacttggcatcatctttctcatagtctatcctatttgggcaatggttatccgatgatta 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33617363 attcagaaattctttcacacaaagacatggaatatctaacacacttggcatcatctttctcatagtctatcctatttgggcaatggttatccgatgatta 33617264  T
Q  707 taaaaacattgtaccatagtagtataatactagctgggaataatgtg-annnnnnnggggggagaaataaattttatggaaagtggagtcagaatgcaac 805  Q
    ||||||| |||||||||| ||||||||||||| | | |||||| | |         ||||||||||||||||||||||||||||||||||||||||||||    
T  33617263 taaaaacgttgtaccataatagtataatactaacggcgaataaggggtttttttttggggggagaaataaattttatggaaagtggagtcagaatgcaac 33617164  T
Q  806 tgaacttcactgtttttgtagacattatgttaattcagagtttattgtaattcatcttcaatgttatatatactagagtacacaattgtcacatagcaat 905  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33617163 tgaacttcactgtttttgtagacattatgttaattcagagtttattgtaattcatcttcaatgttatatatactagagtacacaattgtcacatagcaat 33617064  T
Q  906 cctaaaagtt 915  Q
    ||||||||||    
T  33617063 cctaaaagtt 33617054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 919 - 972
Target Start/End: Complemental strand, 33617030 - 33616974
Alignment:
Q  919 attgttcttggatgcaat--ttttacttaaatgtttg-ttggagtgctaaagtgaaa 972  Q
    ||||||||||||||||||  ||||||||||||| ||| ||| |||||||||||||||    
T  33617030 attgttcttggatgcaatttttttacttaaatgcttgtttgaagtgctaaagtgaaa 33616974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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