View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4471-Insertion-3 (Length: 395)

Name: NF4471-Insertion-3
Description: NF4471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4471-Insertion-3
NF4471-Insertion-3
[»] chr4 (1 HSPs)
chr4 (8-395)||(51034970-51035358)
[»] chr6 (3 HSPs)
chr6 (224-292)||(18700008-18700076)
chr6 (219-337)||(8890995-8891108)
chr6 (344-394)||(18700115-18700165)
[»] chr7 (2 HSPs)
chr7 (219-345)||(10208624-10208749)
chr7 (59-142)||(10208427-10208510)
[»] scaffold0164 (2 HSPs)
scaffold0164 (230-292)||(12205-12267)
scaffold0164 (346-394)||(12308-12356)
[»] chr5 (2 HSPs)
chr5 (219-337)||(40883413-40883526)
chr5 (52-136)||(40883261-40883345)
[»] chr3 (2 HSPs)
chr3 (59-142)||(48118336-48118419)
chr3 (219-271)||(48118175-48118227)
[»] chr1 (4 HSPs)
chr1 (219-273)||(33358295-33358349)
chr1 (260-344)||(33358375-33358458)
chr1 (59-139)||(33357918-33357998)
chr1 (344-394)||(33358485-33358535)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 51034970 - 51035358
Alignment:
Q  8 gtttatattatgagagacagataatagttacttttgaaaccaatagattaaaggtgtaaccgctcaaatcacaaatgtgtcattctaaatttttaacagc 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51034970 gtttatatcatgagagacagataatagttacttttgaaaccaatagattaaag-tgtaaccgctcaaatcacaaatgtgtcattctaaatttttaacagc 51035068  T
Q  108 aaccataaatttagagaaaaacaataaagtgtaacnnnnnnnnnnngaagatagaacaacaataaagacagttgagaagnnnnnnnn--tcatggaacat 205  Q
    |||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||          |||||||||||    
T  51035069 aaccataaatttagagaaaaacaataaagtgtaacaaaaaaaaaaaaaagatagaacaacaataaagacagttgagaagaaaaaaaaaatcatggaacat 51035168  T
Q  206 tgtgagaaccatgaaatgaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactttctttgtttttattttgag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51035169 tgtgagaaccatgaaatgaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactttctttgtttttattttgag 51035268  T
Q  306 ttttagtcctatctttgaatttattgagaaattgagagccgtctttgctcgctcaacttgaataacataacaacaaatacaaataacatg 395  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51035269 ttttagtcctatctttgaatttattgagaaattgagagctgtctttgctcgctcaacttgaataacataacaacaaatacaaataacatg 51035358  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 18700008 - 18700076
Alignment:
Q  224 aaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactttctttg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18700008 aaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactctctttg 18700076  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 337
Target Start/End: Complemental strand, 8891108 - 8890995
Alignment:
Q  219 aaatgaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactttctttgtttttat--tttgagttttagtccta 316  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||       ||| |||||| |||||||||||||  ||||||||| |||  |     
T  8891108 aaataaaaattaaacaaatgatgatcataaagagtggaattagaaacacg-------tacgtgcactctctttgtttttattctttgagtttgagtattg 8891016  T
Q  317 tctttgaatttattgagaaat 337  Q
    ||||||||||| |||||||||    
T  8891015 tctttgaattttttgagaaat 8890995  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 18700115 - 18700165
Alignment:
Q  344 ccgtctttgctcgctcaacttgaataacataacaacaaatacaaataacat 394  Q
    ||||||||||| ||||||| |||||||||| ||||||| |||||| |||||    
T  18700115 ccgtctttgcttgctcaacctgaataacatcacaacaattacaaacaacat 18700165  T

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Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 10208624 - 10208749
Alignment:
Q  219 aaatgaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactttctttgtttt--tattttgagttttagtccta 316  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||  ||||||||||    |||||||  | |||||||||| |||| |     
T  10208624 aaataaaaatgaaacaaatgatgatcgtaatgagtggaattagaaacacgtacattatacatgcact---cttgttttcattttttgagtttgagtcatg 10208720  T
Q  317 tctttgaatttattgagaaattgagagcc 345  Q
    |||||||||||||||||||||||||||||    
T  10208721 tctttgaatttattgagaaattgagagcc 10208749  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 10208427 - 10208510
Alignment:
Q  59 aggtgtaaccgctcaaatcacaaatgtgtcattctaaatttttaacagcaaccataaatttagagaaaaacaataaagtgtaac 142  Q
    ||||||||||||||||||| ||||||| | ||||| ||||||||| ||||| |||   ||||||||| ||||||||||||||||    
T  10208427 aggtgtaaccgctcaaatcgcaaatgtttgattctcaatttttaatagcaatcattgctttagagaacaacaataaagtgtaac 10208510  T

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Target: scaffold0164 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 12205 - 12267
Alignment:
Q  230 aaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactttctttg 292  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  12205 aaacaaatgatgatcataaagagtggaattagaaacacttacatcctacatgcactctctttg 12267  T

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Target: scaffold0164; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 12308 - 12356
Alignment:
Q  346 gtctttgctcgctcaacttgaataacataacaacaaatacaaataacat 394  Q
    ||||||||||||||||| |||||||||| ||||||| ||| || |||||    
T  12308 gtctttgctcgctcaacctgaataacatcacaacaattacgaaaaacat 12356  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 40883413 - 40883526
Alignment:
Q  219 aaatgaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacatcctacatgcactttctttgtttttat--tttgagttttagtccta 316  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||       |||||||||| ||||| |||||||  ||||||||| |||  |     
T  40883413 aaataaaaattaaacaaatgatgatcataaagagtggaattagaaacacg-------tacatgcactctctttatttttattctttgagtttgagtattg 40883505  T
Q  317 tctttgaatttattgagaaat 337  Q
    ||||||||||| |||||||||    
T  40883506 tctttgaattttttgagaaat 40883526  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 40883261 - 40883345
Alignment:
Q  52 agattaaaggtgtaaccgctcaaatcacaaatgtgtcattctaaatttttaacagcaaccataaatttagagaaaaacaataaag 136  Q
    ||||||||| |||||| |||||||||||| ||||  |||||| ||||||||| |||||||||   ||||||||| ||||||||||    
T  40883261 agattaaagttgtaactgctcaaatcacagatgttccattctcaatttttaaaagcaaccattgctttagagaacaacaataaag 40883345  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 48118419 - 48118336
Alignment:
Q  59 aggtgtaaccgctcaaatcacaaatgtgtcattctaaatttttaacagcaaccataaatttagagaaaaacaataaagtgtaac 142  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||| ||||| |||   ||||||||| ||||||||||| ||||    
T  48118419 aggtgtaaccgctcagatcacaaatgtttcattctcaatttttaatagcaatcattgctttagagaacaacaataaagtataac 48118336  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 48118227 - 48118175
Alignment:
Q  219 aaatgaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtac 271  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  48118227 aaataaaaatgaaacaaatgatgatcgtaatgagtggaattagaaacacgtac 48118175  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 33358295 - 33358349
Alignment:
Q  219 aaatgaaaatgaaacaaatgatgatcataaagagtggaattagaaacacgtacat 273  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  33358295 aaataaaaatgaaacaaatgatgatcgtaaagagtggaattagaaacacatacat 33358349  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 33358375 - 33358458
Alignment:
Q  260 agaaacacgtacatcctacatgcactttctttgtttttatttt--gagttttagtcctatctttgaatttattgagaaattgagagc 344  Q
    ||||||||||||||| |||||||||| |   ||||||||||||  |||||| |||| | ||||||||||||||||||||||||||||    
T  33358375 agaaacacgtacatcatacatgcactct---tgtttttattttttgagtttgagtcatgtctttgaatttattgagaaattgagagc 33358458  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 33357918 - 33357998
Alignment:
Q  59 aggtgtaaccgctcaaatcacaaatgtgtcattctaaatttttaacagcaaccataaatttagagaaaaacaataaagtgt 139  Q
    |||||||||||||||||||| | |||| ||||||| |||||||| |||||| |||   ||| |||||||||||||||||||    
T  33357918 aggtgtaaccgctcaaatcaaagatgtttcattctcaatttttatcagcaatcattgctttcgagaaaaacaataaagtgt 33357998  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 33358485 - 33358535
Alignment:
Q  344 ccgtctttgctcgctcaacttgaataacataacaacaaatacaaataacat 394  Q
    ||||||||||||||||||| ||| |||||| ||||||| |||||| |||||    
T  33358485 ccgtctttgctcgctcaacctgagtaacatcacaacaattacaaacaacat 33358535  T

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