View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4471_high_1 (Length: 402)
Name: NF4471_high_1
Description: NF4471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4471_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 79 - 296
Target Start/End: Original strand, 3515929 - 3516146
Alignment:
| Q |
79 |
tatattctttactccctttccggttagattacacaatgtcaatattgaaagaagaagaagaaagcacaaattagggatctaaataaatattatacgatga |
178 |
Q |
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| T |
3515929 |
tatattctttactccctttccggttagattacacaatgttaatattgaaagaagaagaagaaagcacaaattagggatctaaataaatattatacgatga |
3516028 |
T |
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| Q |
179 |
tatttgtatcgtcatgttggataactataatatccatacccgtcatttattcatttcagtatatattaaatggatgatcgatgaattttaaagtatccct |
278 |
Q |
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| T |
3516029 |
tatttgtattgtcatgttggataactataatattcataccagtcatatattcatttcggtatatattaaacatatgatttatgaattttgaagtatccct |
3516128 |
T |
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| Q |
279 |
gaatctttacgaataccc |
296 |
Q |
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| T |
3516129 |
gagtctttccggataccc |
3516146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 3514124 - 3514188
Alignment:
| Q |
18 |
tgaaattcacacaagaagaaaaaatagcatgaacaagttacttacatttttagttgtaggttata |
82 |
Q |
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|||||||||||| ||||||||||| || |||||||| |||||| ||||||||||||||||||||| |
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| T |
3514124 |
tgaaattcacactagaagaaaaaacagtatgaacaaattactttcatttttagttgtaggttata |
3514188 |
T |
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