View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4471_high_2 (Length: 369)
Name: NF4471_high_2
Description: NF4471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4471_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 356
Target Start/End: Original strand, 34703719 - 34704072
Alignment:
| Q |
9 |
attattcttgcatgccatagatgtaatgtaacaggttatagtgcatctagaatgtttacaatcattttgtcnnnnnnnnnnngaa------gaagattac |
102 |
Q |
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| T |
34703719 |
attattcttgcatgccatagatgtaatgtaacaggttatagtgcatctagaatgtttacaatcattttgtcaaaaaaaaaaaaaaaaacaagaagattac |
34703818 |
T |
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| Q |
103 |
aatcacaatatattatatttatgaaagagttttgtttctgtcatttttcatgacaacatgggaacccacgtcagtatatnnnnnnntggatgacaaagaa |
202 |
Q |
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| T |
34703819 |
aatcgcaatatattatatttatgaaagagttttgtttctgtcatttttcatgacaacatgggaacccacgtcagtatataaaaaaatggatgacaaagaa |
34703918 |
T |
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| Q |
203 |
aagaaggatgtggcatgcttaatttccaaccttaacaacaacaaaaggataaaacaaataaaaactaccacaaagctaagaaatatatggaggccttttc |
302 |
Q |
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| T |
34703919 |
aagaaggatgtggcatgcttaatttccaaccttaacaacaacaaaaggataaaacaaataaaaactaccacaaagctaagaaatatatggaggccttttc |
34704018 |
T |
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| Q |
303 |
attttcatgtacatcattatcatcattttaaaaataaattaatgtctgatatga |
356 |
Q |
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| T |
34704019 |
attttcatgtacatcattatcatcattttaaaaataaattaatgtctgatatga |
34704072 |
T |
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