View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4471_low_3 (Length: 290)

Name: NF4471_low_3
Description: NF4471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4471_low_3
NF4471_low_3
[»] chr8 (6 HSPs)
chr8 (57-280)||(2473906-2474130)
chr8 (44-207)||(2469661-2469822)
chr8 (220-280)||(2470779-2470839)
chr8 (1-44)||(3058547-3058590)
chr8 (1-44)||(3062848-3062891)
chr8 (1-45)||(26082805-26082849)
[»] chr4 (2 HSPs)
chr4 (1-44)||(17439309-17439352)
chr4 (1-44)||(17443611-17443654)
[»] chr1 (2 HSPs)
chr1 (1-44)||(4877489-4877532)
chr1 (1-44)||(4873189-4873232)
[»] chr6 (1 HSPs)
chr6 (1-44)||(6667869-6667912)
[»] chr3 (1 HSPs)
chr3 (1-39)||(28010232-28010270)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 57 - 280
Target Start/End: Original strand, 2473906 - 2474130
Alignment:
Q  57 aaaaacaatgcaagaacatgttctattaggatagctgttcttacatctagtacttactagaacatgaaaatctatt----attatatttaaagcgnnnnn 152  Q
    |||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||     |||||||||||||||         
T  2473906 aaaaacaatgcacgaacatgttctgtttggatagctgttcttgcatctagtacttactagaacatgaaaatctatatatcattatatttaaagcgaaaaa 2474005  T
Q  153 nnttaatccagtgaactaactaactaactaaggtttcatatgatgaacatactcaactgaaatatctatgtgatgaagtcgagaggtgcctctttatctt 252  Q
      |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2474006 tattaatccagtgaactaactaactaag---ggtttcatatgatgaacatactcaactgaaagatctatgtgatgaagtcgagaggtgcctctttatctt 2474102  T
Q  253 atttattgcgtaactaccttagcctttg 280  Q
    ||||||||||||||||||||||||||||    
T  2474103 atttattgcgtaactaccttagcctttg 2474130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 207
Target Start/End: Original strand, 2469661 - 2469822
Alignment:
Q  44 acaaaataatatcaaaaacaatgcaagaacatgttctattaggatagctgttcttacatctagtacttactagaacatgaaaatctattattatatttaa 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2469661 acaaaataatatcaaaaacaatgcaagaacatgttctattaggatagctgttcttacatctagtacttactagaacatgaaaatctattattatatttat 2469760  T
Q  144 agcgnnnnnnnttaatccagtgaactaactaactaactaa-ggtttcatatgatgaacatactca 207  Q
    ||||       ||||||||||||||||||||   |||||| |||||||||| ||||| |||||||    
T  2469761 agcgaaaaaaattaatccagtgaactaacta---aactaagggtttcatatcatgaagatactca 2469822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 2470779 - 2470839
Alignment:
Q  220 atgtgatgaagtcgagaggtgcctctttatcttatttattgcgtaactaccttagcctttg 280  Q
    |||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  2470779 atgtcatgaagttgagacgtgcctctttatcttatttattgcgtaattaccttagcctttg 2470839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3058547 - 3058590
Alignment:
Q  1 atgaaattatcttcaagtttctgaaataacttttagttcttaca 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3058547 atgaaattatcttcaagtttctgaaataacttttagttcttaca 3058590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3062848 - 3062891
Alignment:
Q  1 atgaaattatcttcaagtttctgaaataacttttagttcttaca 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3062848 atgaaattatcttcaagtttctgaaataacttttagttcttaca 3062891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26082849 - 26082805
Alignment:
Q  1 atgaaattatcttcaagtttctgaaataacttttagttcttacac 45  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  26082849 atgaaattatcttcaagtttctgaaataacttttagttcatacac 26082805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17439352 - 17439309
Alignment:
Q  1 atgaaattatcttcaagtttctgaaataacttttagttcttaca 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17439352 atgaaattatcttcaagtttctgaaataacttttagttcttaca 17439309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17443654 - 17443611
Alignment:
Q  1 atgaaattatcttcaagtttctgaaataacttttagttcttaca 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17443654 atgaaattatcttcaagtttctgaaataacttttagttcttaca 17443611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4877489 - 4877532
Alignment:
Q  1 atgaaattatcttcaagtttctgaaataacttttagttcttaca 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4877489 atgaaattatcttcaagtttctgaaataacttttagttcttaca 4877532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4873189 - 4873232
Alignment:
Q  1 atgaaattatcttcaagtttctgaaataacttttagttcttaca 44  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  4873189 atgaaattatcttcaagtttctgaaataactttttgttcttaca 4873232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6667912 - 6667869
Alignment:
Q  1 atgaaattatcttcaagtttctgaaataacttttagttcttaca 44  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  6667912 atgaaattatcttaaagtttcttaaataacttttagttcttaca 6667869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 28010270 - 28010232
Alignment:
Q  1 atgaaattatcttcaagtttctgaaataacttttagttc 39  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  28010270 atgaaattatcttcaagtttctgaaatttcttttagttc 28010232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University