View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4471_low_4 (Length: 275)
Name: NF4471_low_4
Description: NF4471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4471_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 418502 - 418246
Alignment:
| Q |
5 |
tacattattcttcttggtatcatttccattagcgagtttgttctggtcatcttctcccttaagttcagcaacaggttgccccatttgacctctgaaacaa |
104 |
Q |
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| T |
418502 |
tacattattcttcttggtatcatttccattagcgagtttgttctggtcatcttctcccttaagttcagcaacaggttgccccatttgacctctgaaacaa |
418403 |
T |
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| Q |
105 |
tttcatacaacacaatttaataatcctcacttagaagcaaaatttaattaattaaaaattcatccacaacattgtttgcacaaaaattaattcccatgta |
204 |
Q |
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| T |
418402 |
tttcatacaacacaatttaataatcctcacttagaagcaaaatttaattaattaaaaattcatccacaacattgtttgcacaaaaactaattcccatgta |
418303 |
T |
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| Q |
205 |
acaaacaaaatggagactcagttttaggataaaagttgtaagatacataacataatg |
261 |
Q |
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| T |
418302 |
acaaacaaaatggagactcagttttaggataaaagttgtaagatacataacataatg |
418246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 406143 - 406074
Alignment:
| Q |
45 |
ttctggtcatcttctcccttaagttcagcaacaggttgccccatttgacctctgaaacaatttcatacaa |
114 |
Q |
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| T |
406143 |
ttctcgtcattttctcccttaacttcagcaataggtggccccatttggcctctgaaacaatttcatacaa |
406074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 645757 - 645709
Alignment:
| Q |
205 |
acaaacaaaatggagactcagttttaggataaaagttgtaagatacata |
253 |
Q |
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||||||||||| |||| |||||||| | |||||||||||||| |||||| |
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| T |
645757 |
acaaacaaaatagagattcagtttttgcataaaagttgtaaggtacata |
645709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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