View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4471_low_7 (Length: 237)
Name: NF4471_low_7
Description: NF4471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4471_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3513946 - 3513724
Alignment:
| Q |
1 |
aaattaaagacttataaag--tttaaggatggatcaaaaactcaatttttgcttcgtatcaacgattgatttcttacaaatttaggacatttaagtacaa |
98 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3513946 |
aaattaaagacttataaagagtttaaggatggatcaaaagctcaatttttgcttcgtatcaacgattgatttcttacaaatttaggacatttaagtacaa |
3513847 |
T |
|
| Q |
99 |
actaaaaaatggaaagcaacaatatgttaccaacatgtgcacactcaagagaaagcaagaacccatattattttcaagcaataataacatatactacgaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3513846 |
actaaaaaatggaaagcaacaatatgttaccaacatgtgcacactcaagagaatgcaagaacccatattattttcaagcaataataacatatactacgaa |
3513747 |
T |
|
| Q |
199 |
cgtggtgaagatgatccccaaaa |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
3513746 |
cgtggtgaagatgatccccaaaa |
3513724 |
T |
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