View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4472-Insertion-1 (Length: 1027)
Name: NF4472-Insertion-1
Description: NF4472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4472-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 330 - 748
Target Start/End: Original strand, 28725385 - 28725818
Alignment:
| Q |
330 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttctggtgaagatat |
429 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28725385 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttctggtgaagat-- |
28725482 |
T |
|
| Q |
430 |
atggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaacttaaatgtaagca |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28725483 |
--ggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaacttaaatgtaagca |
28725580 |
T |
|
| Q |
530 |
ttgtctctatatttgtttagtttcttgtcacttatggatgaacttgatcaatcgtttcaaacatccttgttatgagtataaataaatctatagttttgat |
629 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28725581 |
ttgtctctatatttgtttagtttcttgtcacttaaggatgaacttgatcaatcgtttcaaacatccttgttatgagtataaataaatctatagttttgat |
28725680 |
T |
|
| Q |
630 |
tcattatttactttttgttg----aaactata---------------gatttgttagtgctgaaaactaatggttaatatctttaatgtattttccctat |
710 |
Q |
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|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28725681 |
tcattatttactttttgttgaaaaaaactgtaattattaaattgaagaatttgttagtgctgaaaactaatggttaatatctttaatgtatttttcctat |
28725780 |
T |
|
| Q |
711 |
cttcattgaacttgttttatatgagaaaaactcaaatc |
748 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28725781 |
cttcattgaacttgttttatatgagaaaaactcaaatc |
28725818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 28725049 - 28725292
Alignment:
| Q |
10 |
gaatgctttgcatgatttccagaagctcattgggtgttccatgacttatcccacatacacaaggatacaatgttttggtattgaagctaaagaaaatgaa |
109 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28725049 |
gaatgctttgcatgatttccagaagctcgttgggtgttccatgacttatcccacatacacaaggatacaatgttttggtattgaagctaaccaaaatgaa |
28725148 |
T |
|
| Q |
110 |
gaacgttttctttatggttcttgaaatattgagatgaagtaacatttctcaatatagattatctttcattttcatttgcttgacatgagaagaacaagga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28725149 |
gaacgttttctttatggttcttgaaatattgagatgaagtaacatttctcaatatagattatctttcattttcatttgcttgacatgagaagaacaagga |
28725248 |
T |
|
| Q |
210 |
ttaatcaaaaaacaaatgtaagtctttgtacaaagatctttgta |
253 |
Q |
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| T |
28725249 |
ttaatcaaaaaacaaatgtaagtctttgtacaaagatctttgta |
28725292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 833 - 975
Target Start/End: Original strand, 28725844 - 28725988
Alignment:
| Q |
833 |
ctagtactgccagtaaaagaccaactgagcatggtaatttaaccaatatcatcgctattccttctcaaagag-gcccaataagatttaa-ttttttcaat |
930 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
28725844 |
ctagtactgtcagtaaaagaccaactgagcatggtaatttaaccaatatcatcgctattccttctcaaagagtccccaataagatttaatttttttcaat |
28725943 |
T |
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| Q |
931 |
tatcagaagtcataagctcatgaaaatagatactttgtttcaagt |
975 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28725944 |
tatcaaaagtcataagctcatgaaaatagatactttgtttcaagt |
28725988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 28727634 - 28727763
Alignment:
| Q |
108 |
aagaacgttttctttatggttcttgaaatattgagatgaagtaacatttctcaatatagattatctttcattttcatttgctt-gacatgagaagaacaa |
206 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| |||||||||| ||| || ||||| ||||| |
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| T |
28727634 |
aagaatgttttctttatggttcttgagatattgagatgaagtgacatttctcagtatagattatcttcaattttcattttcttctacttgagagaaacaa |
28727733 |
T |
|
| Q |
207 |
ggattaatcaaaaaacaaatgtaagtctttgt |
238 |
Q |
| |
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||||| ||| ||||||||||||||||||||| |
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| T |
28727734 |
ggattgatc--aaaacaaatgtaagtctttgt |
28727763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 330 - 587
Target Start/End: Original strand, 28727873 - 28728122
Alignment:
| Q |
330 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagt-aatcttattttctggtgaagata |
428 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||| ||||||| |||||||||||||||| ||||| ||||| | |||||||||| ||| ||||||| |
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| T |
28727873 |
tcaggtgagtcaatcatcttcaactca--aactatctccaacatctttgaatggagacgatgattgtttaacaatttaatcttatttactgttgaagat- |
28727969 |
T |
|
| Q |
429 |
tatggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaacttaaatgtaagc |
528 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| || ||||| || |||||||| || ||| || | | |||| ||||||| ||||| | |
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| T |
28727970 |
---ggcttactttatagaattaattacttgcttcttttattttaagaat-attgattagtacttagggtgtttttggtgtggataaacttaattgtaaac |
28728065 |
T |
|
| Q |
529 |
attgtctctatatttgtttagtttcttgtcacttatggatgaacttgatcaatcgtttc |
587 |
Q |
| |
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| || ||| |||||||||| |||||||| |||||| | ||||||||||||||||||| |
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| T |
28728066 |
a--gtttctctatttgtttattttcttgtagcttatgaacgaacttgatcaatcgtttc |
28728122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 28733846 - 28733923
Alignment:
| Q |
109 |
agaacgttttctttatggttcttgaaatattgagatgaagtaacatttctcaatatagattatctttcattttcattt |
186 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| |||||| |||| |
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| T |
28733846 |
agaatgttttctttatggttcttgagatattgagatgaagtgacatttctcagtatagattatcttccattttgattt |
28733923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 330 - 467
Target Start/End: Original strand, 28734087 - 28734221
Alignment:
| Q |
330 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaa-gtaatcttattttctggtgaagata |
428 |
Q |
| |
|
||||||| |||||| ||||||| |||| ||||||||||| ||| ||||||||||||||||| ||||| ||||| ||||||||||| ||| ||||| |
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|
| T |
28734087 |
tcaggtgagtcaatcatcttcagctca--aactatctacagcattattgaatggagacgatgattgtttaacaatttaatcttatttactgttgaag--- |
28734181 |
T |
|
| Q |
429 |
tatggcttac--tttgtagaattaattgcttgcttctttta |
467 |
Q |
| |
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||||||||| ||| ||||||||||| ||||||||||||| |
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| T |
28734182 |
-atggcttactttttatagaattaattacttgcttctttta |
28734221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 833 - 880
Target Start/End: Original strand, 28736881 - 28736928
Alignment:
| Q |
833 |
ctagtactgccagtaaaagaccaactgagcatggtaatttaaccaata |
880 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
28736881 |
ctagtaccgtcagtaaaagaccaactgagcaaggtaatttaaccaata |
28736928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 788 - 821
Target Start/End: Original strand, 28725813 - 28725846
Alignment:
| Q |
788 |
caaatcaaaacaagagcagtaaagttataagcta |
821 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
28725813 |
caaatcaaaacaagagcagtaaagttataagcta |
28725846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 32280896 - 32280971
Alignment:
| Q |
145 |
gaagtaacatttctcaatatagattatctttcattttcatttgctt-gacatgagaagaacaaggattaatcaaaa |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
32280896 |
gaagtaacatttcacaatatagattatctttcattttcatttgcttctacatgagaggaacaaggattaatcaaaa |
32280971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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