View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4472-Insertion-2 (Length: 1000)

Name: NF4472-Insertion-2
Description: NF4472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4472-Insertion-2
NF4472-Insertion-2
[»] chr4 (3 HSPs)
chr4 (387-729)||(5453888-5454230)
chr4 (699-818)||(35902973-35903092)
chr4 (699-797)||(4116460-4116558)
[»] chr8 (4 HSPs)
chr8 (381-747)||(18850859-18851218)
chr8 (436-498)||(18207890-18207952)
chr8 (571-772)||(35615148-35615348)
chr8 (440-711)||(16804546-16804817)
[»] chr3 (5 HSPs)
chr3 (387-729)||(44703110-44703452)
chr3 (387-755)||(925400-925768)
chr3 (312-711)||(36155151-36155551)
chr3 (699-790)||(46921601-46921692)
chr3 (579-729)||(13364191-13364341)
[»] chr5 (5 HSPs)
chr5 (327-755)||(43026577-43027006)
chr5 (116-190)||(39068331-39068405)
chr5 (656-729)||(39483040-39483113)
chr5 (8-53)||(39067194-39067239)
chr5 (963-995)||(13746743-13746775)
[»] scaffold0007 (1 HSPs)
scaffold0007 (617-765)||(79277-79425)
[»] chr6 (5 HSPs)
chr6 (436-666)||(2267500-2267730)
chr6 (571-772)||(32263056-32263258)
chr6 (635-768)||(9853275-9853407)
chr6 (443-504)||(26533178-26533239)
chr6 (571-678)||(22390029-22390136)
[»] chr1 (3 HSPs)
chr1 (436-711)||(47741837-47742112)
chr1 (701-768)||(21219867-21219934)
chr1 (368-401)||(41863414-41863447)
[»] chr7 (5 HSPs)
chr7 (657-819)||(21314306-21314468)
chr7 (699-816)||(40674327-40674444)
chr7 (438-538)||(11003158-11003258)
chr7 (443-538)||(34577054-34577149)
chr7 (480-597)||(21314519-21314635)
[»] chr2 (1 HSPs)
chr2 (701-768)||(42947221-42947288)
[»] scaffold0152 (1 HSPs)
scaffold0152 (572-645)||(13151-13224)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 387 - 729
Target Start/End: Original strand, 5453888 - 5454230
Alignment:
Q  387 taaaagttggagtacatgtgatgttgatgcgaaacttgaacccaattataggcctttgcaatggaacaaggttgataatcacaaggatgggcagatatgt 486  Q
    |||||||||||||||  |||||| | ||| | || ||| |||||| || ||||||||| |||||||| || ||||| || |||| |||||| ||||||||    
T  5453888 taaaagttggagtacccgtgatgctaatgaggaatttggacccaactacaggcctttgtaatggaactagattgattattacaaagatgggaagatatgt 5453987  T
Q  487 tcttgaaggaaaagtgattacaaggaccaatattagtgataaggtgtatatatccagactatctttgtcaccttccgatgctcaaattccttttaaattt 586  Q
     |||||||||||||| || ||| | | ||||||| | || ||||| | |||  | ||||| || |||  ||| || ||| |   ||||||||||||||||    
T  5453988 gcttgaaggaaaagttataacaggaagcaatattggagaaaaggtctttattcctagactttcgttggaaccgtctgatacaagaattccttttaaattt 5454087  T
Q  587 caatgtagacaattccctatctctgtgtgctttgcaatgaccatcaataaaactcaagggtagtctctcaaacaatttggcatataccttccataaccag 686  Q
    ||| |  |||| |||||||| ||||| || ||||||||||||||||| |||| ||| ||| |||| ||||||||  ||||||| ||||||||| ||||||    
T  5454088 caacgccgacagttccctatatctgtttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccag 5454187  T
Q  687 tcttctggcatagtcaactttatgtagcaatatcaagagttac 729  Q
    | ||||  ||| ||||||| |||||||| |||||||| |||||    
T  5454188 tattctctcatggtcaactctatgtagccatatcaagggttac 5454230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 699 - 818
Target Start/End: Original strand, 35902973 - 35903092
Alignment:
Q  699 gtcaactttatgtagcaatatcaagagttaccttaagaaatggcctgaagattttgcgactagatgaagatggtgattgtattgacagtactacaaatgt 798  Q
    |||||||||||||||||||||||| |||||| ||||  ||||| ||||| ||||||| | |||| ||||||| |  ||| ||||| |||||| | |||||    
T  35902973 gtcaactttatgtagcaatatcaaaagttactttaaagaatggtctgaaaattttgctaatagacgaagatgatatttgcattgatagtacttcgaatgt 35903072  T
Q  799 tatgtttcaagaaatttttc 818  Q
      ||||| ||||||| ||||    
T  35903073 agtgtttaaagaaatatttc 35903092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 699 - 797
Target Start/End: Complemental strand, 4116558 - 4116460
Alignment:
Q  699 gtcaactttatgtagcaatatcaagagttaccttaagaaatggcctgaagattttgcgactagatgaagatggtgattgtattgacagtactacaaatg 797  Q
    |||||||||||||||||| |||||   |||||| |||||| || ||||| || |||| | |||||||| |||||| ||| ||||| |||||| ||||||    
T  4116558 gtcaactttatgtagcaacatcaacgattacctcaagaaacggtctgaaaatcttgctaatagatgaaaatggtgtttgcattgatagtacttcaaatg 4116460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 381 - 747
Target Start/End: Complemental strand, 18851218 - 18850859
Alignment:
Q  381 taagactaaaagttggagtacatgtgatgttgatgcgaaacttgaacccaattataggcctttgcaatggaacaaggttgataatcacaaggatgggcag 480  Q
    ||||||||||||||||||| ||| ||||||| | | |||| ||  |||||| || |  ||| || |||||||| |||||| ||||||||| ||||||       
T  18851218 taagactaaaagttggagttcatctgatgttaaggagaaatttcgacccaactaca--cctatgtaatggaactaggttgttaatcacaaagatggggca 18851121  T
Q  481 atatgttcttgaaggaaaagtgattacaaggaccaatattagtgataaggtgtatatatccagactatctttgtcaccttccgatgctcaaattcctttt 580  Q
    || ||||||||||||||| ||||| ||| | | ||| ||| ||||||||||||||||| | | |||||||||| || | || ||| |   |||| |||||    
T  18851120 atttgttcttgaaggaaaggtgataacaggaagcaacattggtgataaggtgtatatacctatactatctttgacatcatctgatacaagaatttctttt 18851021  T
Q  581 aaatttcaatgtagacaattccctatctctgtgtgctttgcaatgaccatcaataaaactcaagggtagtctctcaaacaatttggcatataccttccat 680  Q
    ||||| ||||||||||| || | ||| |||||| | |||||||||||||| || |||| ||||| |||||| || |||||| |||| |||||||    |     
T  18851020 aaatt-caatgtagacagtttcatatatctgtgagttttgcaatgaccattaacaaaagtcaagcgtagtcactaaaacaagttggtatatacc----ac 18850926  T
Q  681 aaccagtcttctggcatagtcaactttatgtagcaatatcaagagttaccttaagaaatggcctgaa 747  Q
    ||||||| || |  ||| ||||||||||||||||||||||||| | ||||| |||||| || |||||    
T  18850925 aaccagtgttgtcacatggtcaactttatgtagcaatatcaagggctacctaaagaaacggtctgaa 18850859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 436 - 498
Target Start/End: Original strand, 18207890 - 18207952
Alignment:
Q  436 aggcctttgcaatggaacaaggttgataatcacaaggatgggcagatatgttcttgaaggaaa 498  Q
    |||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  18207890 aggcctttgcaacggaacaaggttgataattacaaagatgggtagatatgttcttgaaggaaa 18207952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 571 - 772
Target Start/End: Original strand, 35615148 - 35615348
Alignment:
Q  571 aattccttttaaatttcaatgtagacaattccctatctctgtgtgctttgcaatgaccatcaataaaactcaagggtagtctctcaaacaatttggcata 670  Q
    |||||| |||| ||||||| | ||||||||  | || | ||| || |||| |||||| || || |||| ||||||  |||| | ||||||| | ||||||    
T  35615148 aattccctttatatttcaacgcagacaattttcaatatttgtatgttttgtaatgactattaacaaaagtcaaggacagtcacgcaaacaagtaggcata 35615247  T
Q  671 taccttccataaccagtcttctggcatagtcaactttatgtagcaatatcaagagttaccttaagaaatggcctgaagattttgcgactagatgaagatg 770  Q
    || || ||| ||||||| || | |||| ||||||||||||||||||||| ||||||||| | ||| ||||| ||  | ||||||| | ||||||||||||    
T  35615248 tatctcccacaaccagtttttttgcatggtcaactttatgtagcaatat-aagagttacttcaaggaatggtctagaaattttgctaatagatgaagatg 35615346  T
Q  771 gt 772  Q
    ||    
T  35615347 gt 35615348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 440 - 711
Target Start/End: Original strand, 16804546 - 16804817
Alignment:
Q  440 ctttgcaatggaacaaggttgataatcacaaggatgggcagatatgttcttgaaggaaaagtgattacaaggaccaatattagtgataaggtgtatatat 539  Q
    |||||||| ||||||||||||||||| |||| |||||| |||||||||||||||| ||| || || ||| ||| |||| || | ||  ||||||||||      
T  16804546 ctttgcaacggaacaaggttgataattacaaagatgggtagatatgttcttgaagaaaaggtaataacagggagcaatgttggagaacaggtgtatatcc 16804645  T
Q  540 ccagactatctttgtcaccttccgatgctcaaattccttttaaatttcaat-gtagacaattccctatctctgtgtgctttgcaatgaccatcaataaaa 638  Q
    ||||| ||||| | ||||| || ||  |   |||||| |||||| |||||| | |||||||| || |||  ||| || ||||||||||| || || ||||    
T  16804646 ccagattatctctttcaccatctgacacaagaattccgtttaaa-ttcaatagaagacaatttcccatccgtgtatgttttgcaatgactattaacaaaa 16804744  T
Q  639 ctcaagggtagtctctcaaacaatttggcatataccttccataaccagtcttctggcatagtcaactttatgt 711  Q
     ||||||  | |||||||||||| ||||  |||| ||  || |||| || ||||  ||| |||||||||||||    
T  16804745 gtcaaggccaatctctcaaacaagttggagtatatctctcacaacctgtgttctctcatggtcaactttatgt 16804817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 387 - 729
Target Start/End: Complemental strand, 44703452 - 44703110
Alignment:
Q  387 taaaagttggagtacatgtgatgttgatgcgaaacttgaacccaattataggcctttgcaatggaacaaggttgataatcacaaggatgggcagatatgt 486  Q
    |||||||||||||||  |||||| | ||| | || ||| |||||| |  ||||||||| |||||||| || ||||| || |||| |||||| | ||||||    
T  44703452 taaaagttggagtacccgtgatgctaatgaggaatttggacccaactgcaggcctttgtaatggaactagattgattattacaaagatgggaaaatatgt 44703353  T
Q  487 tcttgaaggaaaagtgattacaaggaccaatattagtgataaggtgtatatatccagactatctttgtcaccttccgatgctcaaattccttttaaattt 586  Q
     |||||||||||||| || ||| | | ||||||| | || ||||| | |||  | ||||| || |||  ||| || ||| |   ||||||||||||||||    
T  44703352 gcttgaaggaaaagttataacaggaagcaatattggagaaaaggtctttattcctagactttcgttggaaccgtctgatacaagaattccttttaaattt 44703253  T
Q  587 caatgtagacaattccctatctctgtgtgctttgcaatgaccatcaataaaactcaagggtagtctctcaaacaatttggcatataccttccataaccag 686  Q
    ||| || ||||||||||||| ||||| || ||||||||||||||||| |||| ||| ||| |||| ||||||||  ||| ||| ||||||||| ||||||    
T  44703252 caacgtcgacaattccctatatctgtttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttgacatttaccttccacaaccag 44703153  T
Q  687 tcttctggcatagtcaactttatgtagcaatatcaagagttac 729  Q
    | ||||  ||| ||||||| || ||||| |||||||| |||||    
T  44703152 tattctctcatggtcaactctacgtagccatatcaagggttac 44703110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 387 - 755
Target Start/End: Original strand, 925400 - 925768
Alignment:
Q  387 taaaagttggagtacatgtgatgttgatgcgaaacttgaacccaattataggcctttgcaatggaacaaggttgataatcacaaggatgggcagatatgt 486  Q
    |||||||||||||||  |||||| | ||| | || ||| |||||| |  |||||||||||||||||| || ||||| || |||| |||||| ||||||||    
T  925400 taaaagttggagtacccgtgatgctaatgaggaatttggacccaactgcaggcctttgcaatggaactagattgattattacaaagatgggaagatatgt 925499  T
Q  487 tcttgaaggaaaagtgattacaaggaccaatattagtgataaggtgtatatatccagactatctttgtcaccttccgatgctcaaattccttttaaattt 586  Q
     |||||||||||||| || ||  | | ||||||| | || ||||| | |||  | ||||| || |||  ||| || ||| |   ||||||||||||||||    
T  925500 gcttgaaggaaaagttataactggaagcaatattggagaaaaggtctttattcctagactttcgttggaaccgtctgatacaagaattccttttaaattt 925599  T
Q  587 caatgtagacaattccctatctctgtgtgctttgcaatgaccatcaataaaactcaagggtagtctctcaaacaatttggcatataccttccataaccag 686  Q
    ||| || | || |||||||| ||| | || ||||||||||||||||| |||| ||| ||| | || ||||||||  ||||||| ||||||||| ||||||    
T  925600 caacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcaatcactcaaacaggttggcatttaccttccacaaccag 925699  T
Q  687 tcttctggcatagtcaactttatgtagcaatatcaagagttaccttaagaaatggcctgaagattttgc 755  Q
    | ||||  ||| ||||||| || ||||| |||||||| ||||| | ||| || || ||||| |||||||    
T  925700 tattctatcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgc 925768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 312 - 711
Target Start/End: Original strand, 36155151 - 36155551
Alignment:
Q  312 aggccagatgatatccatacacctgagtt-ttgaacacacttaatgcgtcaggtatcccaaatcaca-gattaagactaaaagttggagtacatgtgatg 409  Q
    ||||| |||||||| || ||||| || || ||||||||| ||||||| || ||||| |||||||||| ||| |||  | ||||| ||||| | ||| |||    
T  36155151 aggcctgatgatattcacacaccagaattcttgaacacaattaatgcatctggtattccaaatcacaagataaagt-tgaaagtgggagtccctgttatg 36155249  T
Q  410 ttgatgcgaaacttgaacccaattataggcctttgcaatggaacaaggttgataatcacaaggatgggcagatatgttcttgaaggaaaagtgattacaa 509  Q
    ||  ||||||||||| ||   |||  |||||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||| || || |||     
T  36155250 ttactgcgaaacttggacattattgcaggcctttgcaacggaacaaggttgataattacaaagatgggtagatatgttcttgaaggaaaggtaataacag 36155349  T
Q  510 ggaccaatattagtgataaggtgtatatatccagactatctttgtcaccttccgatgctcaaattccttttaaatttcaatgtagacaattccctatctc 609  Q
    ||| |||| || | || |||||| ||||  ||||||||||| | ||||| || ||  |   |||||  ||||||||  |  | |||||||| || || ||    
T  36155350 ggagcaatgttggagaaaaggtgcatatccccagactatctctttcaccgtctgacacaagaattctgtttaaattcaacagaagacaatttcccatttc 36155449  T
Q  610 tgtgtgctttgcaatgaccatcaataaaactcaagggtagtctctcaaacaatttggcatataccttccataaccagtcttctggcatagtcaactttat 709  Q
    ||| |||||||||||||| || || |||| ||||||  |||||||||| ||| ||||  |||| || ||| ||||  | ||||  ||| |||||||||||    
T  36155450 tgtatgctttgcaatgactattaacaaaagtcaaggtcagtctctcaagcaagttggtgtatatctcccacaacctatgttctctcatggtcaactttat 36155549  T
Q  710 gt 711  Q
    ||    
T  36155550 gt 36155551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 699 - 790
Target Start/End: Complemental strand, 46921692 - 46921601
Alignment:
Q  699 gtcaactttatgtagcaatatcaagagttaccttaagaaatggcctgaagattttgcgactagatgaagatggtgattgtattgacagtact 790  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||  |||| ||||||| | ||||||||||||||| ||| ||||| ||||||    
T  46921692 gtcaactttatgtagcaatatcaagggttgcctcaagaaatggtttgaaaattttgctattagatgaagatggtgtttgcattgatagtact 46921601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 579 - 729
Target Start/End: Complemental strand, 13364341 - 13364191
Alignment:
Q  579 ttaaatttcaatgtagacaattccctatctctgtgtgctttgcaatgaccatcaataaaactcaagggtagtctctcaaacaatttggcatataccttcc 678  Q
    |||||||||||  ||||||||| || || | ||| || ||||||||||  || || |||| ||||||| |||| || |||||| ||| |||||| |||||    
T  13364341 ttaaatttcaacatagacaatttccaatttgtgtatgttttgcaatgattattaacaaaagtcaagggcagtcactaaaacaagttgacatatatcttcc 13364242  T
Q  679 ataaccagtcttctggcatagtcaactttatgtagcaatatcaagagttac 729  Q
    | |  || | |||| |||| ||||||| |||||||||||||||| ||||||    
T  13364241 aaaggcaattttctcgcatggtcaactctatgtagcaatatcaatagttac 13364191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 327 - 755
Target Start/End: Complemental strand, 43027006 - 43026577
Alignment:
Q  327 catacacctgagtt-ttgaacacacttaatgcgtcaggtatcccaaatcacagattaagactaaaagttggagtacatgtgatgttgatgcgaaacttga 425  Q
    |||||||| ||||| ||||||||| ||||||| || ||  | |||  ||||| | || || |||||||||||||||| |||||| | ||| |||| |||     
T  43027006 catacaccagagttcttgaacacaattaatgcttctggacttccacgtcacaaaatacgattaaaagttggagtacacgtgatgctaatgagaaatttgg 43026907  T
Q  426 acccaattataggcctttgcaatggaacaaggttgataatcacaaggatgggcagatatgttcttgaaggaaaagtgattacaaggaccaatattagtga 525  Q
    |||||| |  ||||||||| |||||||| || ||||| || |||| |||||| |||||||| |||||||||||||| || ||| | | ||||||||| ||    
T  43026906 acccaactgcaggcctttgtaatggaactagattgattattacaaagatgggaagatatgtgcttgaaggaaaagttataacaggaagcaatattagaga 43026807  T
Q  526 taaggtgtatatatccagactatctttgtcaccttccgatgctcaaattccttttaaatttcaatgtagacaattccctatctctgtgtgctttgcaatg 625  Q
     ||||| | |||  | ||||| || |||  ||| || ||| |   ||||||||||||||||||| || |||| |||||||| | ||| || |||||||||    
T  43026806 aaaggtctttattcctagactttcgttggaaccgtctgatacaagaattccttttaaatttcaacgtcgacagttccctatatttgtttgttttgcaatg 43026707  T
Q  626 accatcaataaaactcaagggtagtctctcaaacaatttggcatataccttccataaccagtcttctggcatagtcaactttatgtagcaatatcaagag 725  Q
    | ||| || |||| ||| ||| |||| ||||| ||  ||||||| ||| ||| | ||||||| ||||  ||| ||||||| || ||||| |||||||| |    
T  43026706 aacattaacaaaagtcaggggcagtcactcaagcaggttggcatttacattctacaaccagtattctctcatggtcaactctacgtagccatatcaaggg 43026607  T
Q  726 ttaccttaagaaatggcctgaagattttgc 755  Q
    |||| | ||| || || ||||| |||||||    
T  43026606 ttacatcaaggaaagggctgaaaattttgc 43026577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 39068331 - 39068405
Alignment:
Q  116 aaaatgacgtgtgttcaagcttaataatttcataaacttttatttggtactggctatctcaactgaatttgcatt 190  Q
    |||||||  ||||||||||||||||||||| |||||||| |||||||| || ||||||| |||||||||||||||    
T  39068331 aaaatgaaatgtgttcaagcttaataattttataaacttgtatttggtgctagctatctaaactgaatttgcatt 39068405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 656 - 729
Target Start/End: Original strand, 39483040 - 39483113
Alignment:
Q  656 aaacaatttggcatataccttccataaccagtcttctggcatagtcaactttatgtagcaatatcaagagttac 729  Q
    |||||| ||| |||||| |||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||    
T  39483040 aaacaagttgacatatatcttccagagccagttttctcgcatagtcaactttatgtagcaatatcaagagttac 39483113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 39067194 - 39067239
Alignment:
Q  8 tatattacatggtagatggcctaccactataatttggacgttcaac 53  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  39067194 tatattacatggtagatggcctaccactagaatttggacgttcaac 39067239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 963 - 995
Target Start/End: Complemental strand, 13746775 - 13746743
Alignment:
Q  963 tatccaaattctactattctagtatatatataa 995  Q
    |||||||||||||||||||||||||||||||||    
T  13746775 tatccaaattctactattctagtatatatataa 13746743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 617 - 765
Target Start/End: Complemental strand, 79425 - 79277
Alignment:
Q  617 tttgcaatgaccatcaataaaactcaagggtagtctctcaaacaatttggcatataccttccataaccagtcttctggcatagtcaactttatgtagcaa 716  Q
    ||||||||||| || || |||| ||||||| |||| ||||||||| ||| |||||| |||||| ||||||| |||| |||| ||||||||||||||||||    
T  79425 tttgcaatgactatgaacaaaagtcaagggcagtcactcaaacaagttgacatatatcttccacaaccagtgttcttgcatggtcaactttatgtagcaa 79326  T
Q  717 tatcaagagttaccttaagaaatggcctgaagattttgcgactagatga 765  Q
    ||||| ||||||| | ||| ||||| ||||| |||| || | |||||||    
T  79325 tatcaggagttacttcaaggaatggtctgaaaatttcgctaatagatga 79277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 436 - 666
Target Start/End: Complemental strand, 2267730 - 2267500
Alignment:
Q  436 aggcctttgcaatggaacaaggttgataatcacaaggatgggcagatatgttcttgaaggaaaagtgattacaaggaccaatattagtgataaggtgtat 535  Q
    |||||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||| || || ||| ||| |||| || | || |||||||||    
T  2267730 aggcctttgcaacggaacaaggttgataattacaaagatgggtagatatgttcttgaaggaaaggtaataacagggagcaatgttggagaaaaggtgtat 2267631  T
Q  536 atatccagactatctttgtcaccttccgatgctcaaattccttttaaatttcaat-gtagacaattccctatctctgtgtgctttgcaatgaccatcaat 634  Q
    ||  ||||| ||||| | ||||| || ||  |   |||||| |||||| |||||| | |||||||| || |||  ||| |||||||||||||| || ||     
T  2267630 atccccagattatctctttcaccatctgacacaagaattccgtttaaa-ttcaatagaagacaatttcccatccgtgtatgctttgcaatgactattaac 2267532  T
Q  635 aaaactcaagggtagtctctcaaacaatttgg 666  Q
    |||| ||||||  |||||||||||||| ||||    
T  2267531 aaaagtcaaggccagtctctcaaacaagttgg 2267500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 571 - 772
Target Start/End: Original strand, 32263056 - 32263258
Alignment:
Q  571 aattccttttaaatttcaatgtagacaattccctatctctgtgtgctttgcaatgaccatcaataaaactcaagggtagtctctcaaacaatttggcata 670  Q
    |||||| |||| ||||||| ||||||||||  | || | ||| || |||| |||||| || || |||| ||||||| |||| | ||||||| | ||||||    
T  32263056 aattccatttatatttcaacgtagacaattttcaatatttgtatgttttgtaatgactattaacaaaaatcaagggcagtcacgcaaacaagtaggcata 32263155  T
Q  671 taccttccataaccagtcttctg-gcatagtcaactttatgtagcaatatcaagagttaccttaagaaatggcctgaagattttgcgactagatgaagat 769  Q
    || || ||| ||||||| || |  |||| ||||||||||||||||||||||||||||||| | ||  | |||  |||| ||||||| | |||||||||||    
T  32263156 tatctcccacaaccagttttttttgcattgtcaactttatgtagcaatatcaagagttacttcaatgagtggtttgaaaattttgctaatagatgaagat 32263255  T
Q  770 ggt 772  Q
    |||    
T  32263256 ggt 32263258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 635 - 768
Target Start/End: Original strand, 9853275 - 9853407
Alignment:
Q  635 aaaactcaagggtagtctctcaaacaatttggcatataccttccataaccagtcttctggcatagtcaactttatgtagcaatatcaagagttaccttaa 734  Q
    |||| ||||||  |||| |||||| || |||||||||| |||||| |||| || |||| ||||   |||||||||||||||||||| |||||||| | ||    
T  9853275 aaaagtcaaggacagtcactcaaataagttggcatatatcttccacaacc-gtgttctcgcatgaacaactttatgtagcaatatcgagagttacttcaa 9853373  T
Q  735 gaaatggcctgaagattttgcgactagatgaaga 768  Q
    |  |||||||||| ||||||| |||| |||||||    
T  9853374 gggatggcctgaaaattttgctactatatgaaga 9853407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 26533178 - 26533239
Alignment:
Q  443 tgcaatggaacaaggttgataatcacaaggatgggcagatatgttcttgaaggaaaagtgat 504  Q
    |||||||| || ||||||||||| || |||||||| |||||||| ||||||||||| |||||    
T  26533178 tgcaatggtactaggttgataattactaggatgggtagatatgtccttgaaggaaaggtgat 26533239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 678
Target Start/End: Complemental strand, 22390136 - 22390029
Alignment:
Q  571 aattccttttaaatttcaatgtagacaattccctatctctgtgtgctttgcaatgaccatcaataaaactcaagggtagtctctcaaacaatttggcata 670  Q
    |||| |||||||||||||| || |||| ||| |||| | ||| |  ||||| |||||||| ||||||| ||||||  |||| || ||| || ||||||||    
T  22390136 aatttcttttaaatttcaacgtcgacagttcgctatatttgtatcttttgcgatgaccattaataaaagtcaaggacagtcactaaaataagttggcata 22390037  T
Q  671 taccttcc 678  Q
    ||||||||    
T  22390036 taccttcc 22390029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 7e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 436 - 711
Target Start/End: Original strand, 47741837 - 47742112
Alignment:
Q  436 aggcctttgcaatggaacaaggttgataatcacaaggatgggcagatatgttcttgaaggaaaagtgattacaaggaccaatattagtgataaggtgtat 535  Q
    |||||||||||| |||||||||||| |||| |||| |||||| |||||||||||||||||||| || || ||| ||| |||| || | || |||||||||    
T  47741837 aggcctttgcaacggaacaaggttgctaattacaaagatgggtagatatgttcttgaaggaaaggtaataacagggagcaatgttggagaaaaggtgtat 47741936  T
Q  536 atatccagactatctttgtcaccttccgatgctcaaattccttttaaatttcaat-gtagacaattccctatctctgtgtgctttgcaatgaccatcaat 634  Q
    ||  ||||| ||||| | ||||| || ||  |   |||||| |||||| |||||| | |||||||| || |||  ||| |||||||||||||| || ||     
T  47741937 atccccagattatctctttcaccatctgacacaagaattccgtttaaa-ttcaatagaagacaatttcccatccgtgtatgctttgcaatgactattaac 47742035  T
Q  635 aaaactcaagggtagtctctcaaacaatttggcatataccttccataaccagtcttctggcatagtcaactttatgt 711  Q
    |||| ||||||  | |||||||||||| ||||  |||| ||  || |||| || ||||  ||| |||||||||||||    
T  47742036 aaaagtcaaggccaatctctcaaacaagttggagtatatctctcacaacctgtattctctcatggtcaactttatgt 47742112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 701 - 768
Target Start/End: Complemental strand, 21219934 - 21219867
Alignment:
Q  701 caactttatgtagcaatatcaagagttaccttaagaaatggcctgaagattttgcgactagatgaaga 768  Q
    |||||||||||||||||||||| |||||| | |||  |||||||||| ||||||| ||||||||||||    
T  21219934 caactttatgtagcaatatcaatagttacttcaagggatggcctgaaaattttgctactagatgaaga 21219867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 401
Target Start/End: Complemental strand, 41863447 - 41863414
Alignment:
Q  368 ccaaatcacagattaagactaaaagttggagtac 401  Q
    |||||||||| |||||||||||||||||||||||    
T  41863447 ccaaatcacaaattaagactaaaagttggagtac 41863414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 3e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 657 - 819
Target Start/End: Complemental strand, 21314468 - 21314306
Alignment:
Q  657 aacaatttggcatataccttccataaccagtcttctggcatagtcaactttatgtagcaatatcaagagttaccttaagaaatggcctgaagattttgcg 756  Q
    ||||| |||| |||||||||||| | ||| | ||||  ||| ||||||||||||||||||||||||| | ||  ||||||||||| || || | |||||     
T  21314468 aacaagttggtatataccttccacagccaatgttctcacatggtcaactttatgtagcaatatcaagggctatattaagaaatggtctaaaaactttgct 21314369  T
Q  757 actagatgaagatggtgattgtattgacagtactacaaatgttatgtttcaagaaatttttcg 819  Q
    | ||||| ||||||||| ||| ||||| ||| || | |||||  ||||| |||||||||||||    
T  21314368 aatagataaagatggtgtttgcattgatagttcttcgaatgtagtgtttaaagaaatttttcg 21314306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 699 - 816
Target Start/End: Complemental strand, 40674444 - 40674327
Alignment:
Q  699 gtcaactttatgtagcaatatcaagagttaccttaagaaatggcctgaagattttgcgactagatgaagatggtgattgtattgacagtactacaaatgt 798  Q
    ||||||||||||||||||||||||| | ||  ||||||||||| ||||| | ||||| | ||||| ||||||||| ||| |||||  || || | |||||    
T  40674444 gtcaactttatgtagcaatatcaagggctatattaagaaatggtctgaaaactttgctaatagataaagatggtgtttgcattgatggttcttcgaatgt 40674345  T
Q  799 tatgtttcaagaaatttt 816  Q
      ||||| ||||||||||    
T  40674344 agtgtttaaagaaatttt 40674327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 538
Target Start/End: Complemental strand, 11003258 - 11003158
Alignment:
Q  438 gcctttgcaatggaacaaggttgataatcacaaggatgggcagatatgttcttgaaggaaaagtgattacaaggaccaatattagtgataaggtgtatat 537  Q
    |||| |||||||| || ||||||||||| |||| |||||| | |||||||||||||||||| ||||| ||| | | ||| ||| | |||||||| |||||    
T  11003258 gcctatgcaatggtacgaggttgataattacaaagatgggtatatatgttcttgaaggaaaggtgataacaggtagcaacattggagataaggtctatat 11003159  T
Q  538 a 538  Q
    |    
T  11003158 a 11003158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 538
Target Start/End: Original strand, 34577054 - 34577149
Alignment:
Q  443 tgcaatggaacaaggttgataatcacaaggatgggcagatatgttcttgaaggaaaagtgattacaaggaccaatattagtgataaggtgtatata 538  Q
    |||||||| || ||||||||||| || |  ||||| |||||||||||||||||||| ||||| ||| | | ||| ||| |||| ||||| ||||||    
T  34577054 tgcaatggtactaggttgataattaccaaaatgggtagatatgttcttgaaggaaaggtgataacaggtagcaacattggtgacaaggtatatata 34577149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 480 - 597
Target Start/End: Complemental strand, 21314635 - 21314519
Alignment:
Q  480 gatatgttcttgaaggaaaagtgattacaaggaccaatattagtgataaggtgtatatatccagactatctttgtcaccttccgatgctcaaattccttt 579  Q
    |||||||||  |||||||| ||||| ||| | | ||| ||| ||||||||||||||||| | | |||||||||| |||| |||| | |   |||| ||||    
T  21314635 gatatgttccggaaggaaaggtgataacaggaagcaacattggtgataaggtgtatatacctatactatctttgacaccatccgttacaagaatttcttt 21314536  T
Q  580 taaatttcaatgtagaca 597  Q
    |||| |||||||||||||    
T  21314535 taaa-ttcaatgtagaca 21314519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 701 - 768
Target Start/End: Complemental strand, 42947288 - 42947221
Alignment:
Q  701 caactttatgtagcaatatcaagagttaccttaagaaatggcctgaagattttgcgactagatgaaga 768  Q
    |||||||||||||||||||||| |||||| | |||  |||||||||| ||||||| ||||||||||||    
T  42947288 caactttatgtagcaatatcaatagttacttcaagggatggcctgaaaattttgctactagatgaaga 42947221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 572 - 645
Target Start/End: Original strand, 13151 - 13224
Alignment:
Q  572 attccttttaaatttcaatgtagacaattccctatctctgtgtgctttgcaatgaccatcaataaaactcaagg 645  Q
    |||||||| || |||||| |  ||||||||||||| | ||||| |||||||||||| ||||| |||| ||||||    
T  13151 attcctttcaagtttcaacgctgacaattccctatatatgtgtcctttgcaatgacaatcaacaaaattcaagg 13224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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