View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4472-Insertion-4 (Length: 456)
Name: NF4472-Insertion-4
Description: NF4472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4472-Insertion-4 |
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| [»] scaffold1215 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 7 - 430
Target Start/End: Complemental strand, 34376184 - 34375764
Alignment:
| Q |
7 |
attaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttccaagggcaatgtccttagca |
106 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34376184 |
attaaattaagatagaaattttcactcatgagtatagttgatatttataagatatccaagaacatggtcatacctttttccaagggaaatgtccttagca |
34376085 |
T |
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| Q |
107 |
agggtgaggtcggaggcacggctaatggtatcttcatcttaaaaaagaatcactagaacttggaacatatacatagtctccagatggcgacagtcgtgaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
34376084 |
agggtgaggtcggaggcacggctaatggtatcttcatcttaaaaaaagatcactagaacttggaacatatacattgtctccagatggcgacagtagtgaa |
34375985 |
T |
|
| Q |
207 |
ttaaaagatggttcatgcttattgtttccccaaaaggcatgtttcttgtcatgcaatatccaatcaacactcgcaatgtcgtaagttccaacttccaagt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34375984 |
ttaaaagatggttcatgcttattgtttccccaaaaggcatgtttcttgtcatgcaatatccaatcaacactcgcaatgtcgtaggttccaacttccaagt |
34375885 |
T |
|
| Q |
307 |
ggacgaagttggctatgatatatcgttatatcaatacatagaatcgagttagataagaatcaaatattccgacgcagaaactgagctatgttgttacaat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
34375884 |
ggacgaagttggctatgatatatcgttatatcaatacatagaatcgagttagataagaatcaaatattccgacgcagaaactgagcta---ttttacaat |
34375788 |
T |
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| Q |
407 |
caaagaacataaatcacaaacact |
430 |
Q |
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| T |
34375787 |
caaagaacataaatcacaaacact |
34375764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 34477708 - 34477788
Alignment:
| Q |
7 |
attaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttcc |
87 |
Q |
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| T |
34477708 |
attaaattcagatagaaattttcactcgtaagtatagttgatatttataacatatccaagaaaaggatcataccttattcc |
34477788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 34462643 - 34462722
Alignment:
| Q |
8 |
ttaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttcc |
87 |
Q |
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| T |
34462643 |
ttaaattcagatagaaattttctatcgtgagtatagttgatatttataacatatccaagaacaacatcatacctttttcc |
34462722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 34467762 - 34467844
Alignment:
| Q |
7 |
attaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttccaa |
89 |
Q |
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| T |
34467762 |
attaaattcagataggcattttccctcatgagcatagttgatatttataacatatccaagaacaggatcatacttttctccaa |
34467844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 34372819 - 34372741
Alignment:
| Q |
8 |
ttaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttc |
86 |
Q |
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|||| |||||||||| |||||||||| |||||| | ||||||||||||| ||||||| | || | ||||||||||||| |
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| T |
34372819 |
ttaatttcagatagacattttcactcatgagtacaattgatatttataaattatccaaaagcaggatcatacctttttc |
34372741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 34473767 - 34473849
Alignment:
| Q |
7 |
attaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttccaa |
89 |
Q |
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| T |
34473767 |
attaacttcagatagacattttaactcatgagcatatttgatatttataacatatcaaatagcaggatcatacctttttccaa |
34473849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 27617154 - 27617195
Alignment:
| Q |
354 |
gttagataagaatcaaatattccgacgcagaaactgagctat |
395 |
Q |
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| T |
27617154 |
gttagataagaatcaaatacttctacgcagaaactgagctat |
27617195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 34505939 - 34505980
Alignment:
| Q |
354 |
gttagataagaatcaaatattccgacgcagaaactgagctat |
395 |
Q |
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| T |
34505939 |
gttagataagaatcaaatacttctacgcagaaactgagctat |
34505980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 10533308 - 10533446
Alignment:
| Q |
7 |
attaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttccaagggcaatgtccttagca |
106 |
Q |
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||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||||| | || | |||||||||||||||| || |||||| || ||| |
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| T |
10533308 |
attaacttcagatagacattttcactcgtgagtacagttgatatttataacttatccaaaagcaggatcatacctttttccaatgggaatgtcatttgca |
10533407 |
T |
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| Q |
107 |
agggtgaggtcggaggcacggctaatggtatcttcatct |
145 |
Q |
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| T |
10533408 |
tcgctgatgtctgaggcatcactgatggtatcttcatct |
10533446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 10526499 - 10526591
Alignment:
| Q |
7 |
attaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttccaagggcaatgtc |
99 |
Q |
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| T |
10526499 |
attaacttcagatagatattttcactcatgagtacagttgatatttatagcttatcaaaaagcaggatcatacctttttccaatgggaatgtc |
10526591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1215 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 493 - 585
Alignment:
| Q |
7 |
attaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttccaagggcaatgtc |
99 |
Q |
| |
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||||| |||||||||| |||||||||| |||||| |||||||||||||| |||| || | || | |||||||||||||||| || |||||| |
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| T |
493 |
attaacttcagatagatattttcactcatgagtacagttgatatttatagcttatcaaaaagcaggatcatacctttttccaatgggaatgtc |
585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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