View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4472-Insertion-6 (Length: 257)

Name: NF4472-Insertion-6
Description: NF4472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4472-Insertion-6
NF4472-Insertion-6
[»] chr2 (3 HSPs)
chr2 (124-210)||(20019886-20019972)
chr2 (124-204)||(20000724-20000804)
chr2 (124-202)||(20029891-20029969)
[»] chr1 (2 HSPs)
chr1 (124-209)||(12572223-12572308)
chr1 (124-181)||(38192329-38192386)
[»] chr4 (1 HSPs)
chr4 (128-203)||(48301223-48301298)
[»] chr8 (2 HSPs)
chr8 (124-204)||(35038756-35038835)
chr8 (124-162)||(35039528-35039566)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 20019972 - 20019886
Alignment:
Q  124 ccaaacaaacctatgctaccacattgtgatacaactatgcaggtgcaaaacattttctgctctgaatcagtttgtgatggtatcttt 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||||    
T  20019972 ccaaacaaccctatgctaccacattgtgatacaactatgcaggtgcaaaactttttcttctctgaaccagtttgtgatggcatcttt 20019886  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 20000804 - 20000724
Alignment:
Q  124 ccaaacaaacctatgctaccacattgtgatacaactatgcaggtgcaaaacattttctgctctgaatcagtttgtgatggt 204  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||| || |||||||||||    
T  20000804 ccaaacaaacctatgctaccacattggtatacaactaggcaggtgtaaaacattttctgctctgaaccaatttgtgatggt 20000724  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 20029969 - 20029891
Alignment:
Q  124 ccaaacaaacctatgctaccacattgtgatacaactatgcaggtgcaaaacattttctgctctgaatcagtttgtgatg 202  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||| || |||| ||||    
T  20029969 ccaaacaaacctatgataccacattgggatacaactatgcaggtgtaaaacattttctgatctgaaccaatttgagatg 20029891  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 12572223 - 12572308
Alignment:
Q  124 ccaaacaaacctatgctaccacattgtgatacaactatgcaggtgcaaaacattttctgctctgaatcagtttgtgatggtatctt 209  Q
    ||||||||||||||| ||||||||||   |||| ||||||||||| |||||||||||| ||||||| || ||||||||||||||||    
T  12572223 ccaaacaaacctatgttaccacattggactacagctatgcaggtgtaaaacattttctactctgaaccaatttgtgatggtatctt 12572308  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 38192386 - 38192329
Alignment:
Q  124 ccaaacaaacctatgctaccacattgtgatacaactatgcaggtgcaaaacattttct 181  Q
    ||||| || |||||||||||||||||   |||||||||||||||| ||||||||||||    
T  38192386 ccaaataatcctatgctaccacattgcactacaactatgcaggtgtaaaacattttct 38192329  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 48301298 - 48301223
Alignment:
Q  128 acaaacctatgctaccacattgtgatacaactatgcaggtgcaaaacattttctgctctgaatcagtttgtgatgg 203  Q
    |||| ||||||||||||||||| | |||| ||||||||||  ||||||||||||||| || |||| ||||||||||    
T  48301298 acaatcctatgctaccacattgggctacacctatgcaggtttaaaacattttctgctttgtatcaatttgtgatgg 48301223  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 35038835 - 35038756
Alignment:
Q  124 ccaaacaaacctatgctaccacattgtgatacaactatgcaggtgcaaaacattttctgctctgaatcagtttgtgatggt 204  Q
    |||||||||||||||||| ||| |||  |||||||| |||||||| |||||||||||| |||| || || |||||||||||    
T  35038835 ccaaacaaacctatgctaacacgttgc-atacaactttgcaggtgtaaaacattttctactctaaaccaatttgtgatggt 35038756  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 35039528 - 35039566
Alignment:
Q  124 ccaaacaaacctatgctaccacattgtgatacaactatg 162  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  35039528 ccaaacaaacctatgctaccacattgggatacaactatg 35039566  T

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