View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4472-Insertion-7 (Length: 192)

Name: NF4472-Insertion-7
Description: NF4472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4472-Insertion-7
NF4472-Insertion-7
[»] chr8 (1 HSPs)
chr8 (145-189)||(14952757-14952801)
[»] chr4 (2 HSPs)
chr4 (151-191)||(42937594-42937634)
chr4 (145-192)||(29391227-29391274)
[»] chr2 (1 HSPs)
chr2 (145-180)||(34881785-34881820)
[»] chr3 (1 HSPs)
chr3 (148-191)||(49137592-49137635)


Alignment Details
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 14952801 - 14952757
Alignment:
Q  145 tgtacctataatatttatctttaatttgttaattaagagttgata 189  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  14952801 tgtacctataatatttatctttaatttgttaattaagggttgata 14952757  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 42937634 - 42937594
Alignment:
Q  151 tataatatttatctttaatttgttaattaagagttgatatt 191  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  42937634 tataatatttatctttaatttgttagttaagggttgatatt 42937594  T

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Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 29391227 - 29391274
Alignment:
Q  145 tgtacctataatatttatctttaatttgttaattaagagttgatattg 192  Q
    |||||||| ||||| |  |||||||||||||||||| |||||||||||    
T  29391227 tgtacctacaatatatgcctttaatttgttaattaacagttgatattg 29391274  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 180
Target Start/End: Original strand, 34881785 - 34881820
Alignment:
Q  145 tgtacctataatatttatctttaatttgttaattaa 180  Q
    |||| |||||||||||||||||||||||||||||||    
T  34881785 tgtatctataatatttatctttaatttgttaattaa 34881820  T

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Target: chr3 (Bit Score: 28; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 49137635 - 49137592
Alignment:
Q  148 acctataatatttatctttaatttgttaattaagagttgatatt 191  Q
    ||||| |||||||||  |||||||||||||||| ||||||||||    
T  49137635 acctacaatatttattattaatttgttaattaatagttgatatt 49137592  T

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