View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4472_high_3 (Length: 252)
Name: NF4472_high_3
Description: NF4472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4472_high_3 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 41311187 - 41311395
Alignment:
| Q |
11 |
caaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311187 |
caaaggcaataataacatccatttcagtcttatcatcataaaccagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagct |
41311286 |
T |
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| Q |
111 |
tgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagataccatg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41311287 |
tgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaaaatctccaagtcaattgaactagataccatg |
41311386 |
T |
|
| Q |
211 |
tatttttat |
219 |
Q |
| |
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||||||||| |
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| T |
41311387 |
tatttttat |
41311395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 43164868 - 43165062
Alignment:
| Q |
14 |
aggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgc |
113 |
Q |
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|||||||||||||||| |||||||||| || || ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| | || ||| | |
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| T |
43164868 |
aggcaataataacatctatttcagtctcataattataaaccagccaatgaatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttc |
43164967 |
T |
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| Q |
114 |
agtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacca |
208 |
Q |
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| T |
43164968 |
agtattccaataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtcaatcgaactagatacca |
43165062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 30165740 - 30165608
Alignment:
| Q |
11 |
caaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagct |
110 |
Q |
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|||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |
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| T |
30165740 |
caaaggcaataataacatccatttcagtctgataattataaaccagccaatgaatagaaccattgaagaacgacccaactctgggaccaccttcagagca |
30165641 |
T |
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| Q |
111 |
tgcagtattcttataaggcaaatcagaatcaaa |
143 |
Q |
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| T |
30165640 |
tgcagggttcctataaggcaaatgagaatcaaa |
30165608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 30125141 - 30125328
Alignment:
| Q |
11 |
caaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagct |
110 |
Q |
| |
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||||||||| |||||||||| | | |||| || || || || |||||||||||||| |||||||||||| ||||||||||||| | || ||||||| |
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| T |
30125141 |
caaaggcaacaataacatccttgttggtctcatgattatgaaccagccaatgaatagtcccattcaagaacaacccaactctgggccatccgttagagcg |
30125240 |
T |
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| Q |
111 |
tgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaa |
198 |
Q |
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||||||||| |||||||||||| ||||||||||||||||| ||||| | |||| ||||||||| ||| |||||||||||||||||| |
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| T |
30125241 |
agcagtattcctataaggcaaatgagaatcaaactcaatttcctcccacttattagctctcaatgggaaaatctccaagtcaattgaa |
30125328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 30131096 - 30131178
Alignment:
| Q |
12 |
aaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgg |
94 |
Q |
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|||||| |||||||||||| || |||| || || ||||| |||||||||||||| |||||||||||| |||| ||||||| |
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| T |
30131096 |
aaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccattcaagaacaacccgactctgg |
30131178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 28180514 - 28180559
Alignment:
| Q |
162 |
attacctctcaatgagaacatctccaagtcaattgaactagatacc |
207 |
Q |
| |
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|||| ||||||||||||| ||||| || |||||||||||||||||| |
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| T |
28180514 |
attagctctcaatgagaaaatctctaattcaattgaactagatacc |
28180559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 21430244 - 21430161
Alignment:
| Q |
123 |
ataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacc |
207 |
Q |
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||||||||||| |||| ||| |||||||| |||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
21430244 |
ataaggcaaatgagaagcaacctcaattttttcc-attgattagctctcaatgagaaaatctctaagtcaattgaactagatacc |
21430161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 21426550 - 21426470
Alignment:
| Q |
122 |
tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactag |
202 |
Q |
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|||||||||||| |||| ||| ||||||||||| ||||| || | ||||||||||||| |||| ||||||||||||||||| |
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| T |
21426550 |
tataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaatcttcaagtcaattgaactag |
21426470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1051 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 1971 - 2039
Alignment:
| Q |
124 |
taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtca |
192 |
Q |
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||||||||| |||| ||||||||||||||| ||| | |||| ||||||||||||| |||||||||||| |
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| T |
1971 |
taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtca |
2039 |
T |
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