View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4472_low_2 (Length: 304)
Name: NF4472_low_2
Description: NF4472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4472_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 30848948 - 30849197
Alignment:
| Q |
1 |
gaggaagagaattgtaatgattacgaatggtggagataagattatcaggaagctgagttccaggataaagttgagtaagattacgaagaacagaagccca |
100 |
Q |
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| T |
30848948 |
gaggaagagaattgtaatgattacgaatggtggagataagattatcaggaagctgagttccagggtagagttgagtaagattacgaagaacagaagccca |
30849047 |
T |
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| Q |
101 |
agcaagtttcttagaagaaggaggagactcaggattgttagtattattaaggttgagtgtgtttttgaaagatgtgattgcatcagaaagattacgacca |
200 |
Q |
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| T |
30849048 |
agcaagtttcttagaagaaggaggagactcaggattgttagtattattaaggttgagtgtgtttttgaaagatgtgattgcatcagaaagattacgacca |
30849147 |
T |
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| Q |
201 |
agtttgtgaaacttgttcttgtgtatgagaatggaagagtctttggaagc |
250 |
Q |
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| T |
30849148 |
agtttgtgaaacttgttcttgtgtatgagaatggaagagtctttggaagc |
30849197 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 26561473 - 26561534
Alignment:
| Q |
21 |
ttacgaatggtggagataagattatcaggaagctgagttccaggataaagttgagtaagatt |
82 |
Q |
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| T |
26561473 |
ttacgaatgttggacataagcttttcaggaagctggctaccaggataaagctgagtaagatt |
26561534 |
T |
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