View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4472_low_8 (Length: 214)
Name: NF4472_low_8
Description: NF4472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4472_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 50899362 - 50899245
Alignment:
| Q |
1 |
agcgtttatcgaggttgagtttgaaaaggtgaatcgaattgtggcttaagattttgcaaaacatgaagcggtttcacgttgtgagtgcctacggcaatga |
100 |
Q |
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| T |
50899362 |
agcgtttatcgaggttgagtttgaaaaggtgaatcgaattgtggcttaagattttgcaaaacatgaagcgatttcacgttgtgagtgactacggcaatga |
50899263 |
T |
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| Q |
101 |
aatattagggttatttaa |
118 |
Q |
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| T |
50899262 |
aatattagggttatttaa |
50899245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 50899263 - 50899185
Alignment:
| Q |
123 |
aaatattagagttatttaataacgggcaaagcccatttttccccggcgtaaaatgaaaaccgagcactgtttttctccc |
201 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
50899263 |
aaatattagggttatttaataacgggccaagcccatttttcccccgcgtaaaatggaaaccgagcactgtttttctccc |
50899185 |
T |
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