View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4473-Insertion-1 (Length: 801)
Name: NF4473-Insertion-1
Description: NF4473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4473-Insertion-1 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 511 - 801
Target Start/End: Original strand, 22442365 - 22442657
Alignment:
| Q |
511 |
attcattgtagtttgcatcttaactcccgatccatggatcagtttgtaaattctgaacaattaatcgggacataacaatttgagaaggggaaatcgggat |
610 |
Q |
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| T |
22442365 |
attcattgtagtttgcatcttaactcccgatccatggatcagtttgtaaattatgaacaattaatcgggacgtaacaatttgaaaaggagcaatcgggat |
22442464 |
T |
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| Q |
611 |
gtaagtctcgatagggtatttttgggtcttcgaggtgcctgtgagcatttgaaagtgcgtaaagagcaattttgttaggattaatgttagtttaatgtgg |
710 |
Q |
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| T |
22442465 |
gtaagtctcgatagggtatttttgggtcttcgaggtgcctgtgagcatttgaaagtgcgcaaagagcaattttgttaggattaatgttagtttaatgtgg |
22442564 |
T |
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| Q |
711 |
cttttccttgctcctactaattagctcatgactcc--tatatatgttacctccatattatcaataaaaattgactccttctttttccattcta |
801 |
Q |
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| T |
22442565 |
cttttccttgctcctgctaattagctcatgactcctatatatatgttacctccatattatcaataaaaatagactccttccttttccattcta |
22442657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 267 - 508
Target Start/End: Original strand, 22441556 - 22441797
Alignment:
| Q |
267 |
atcgtttagaggtggacgacgtgacattcattccttatgaggaccattgttagacgcatccgttcgacaacatatattggtgctacaattgggtaaagtg |
366 |
Q |
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| T |
22441556 |
atcgcttagaggtggacgacatgacattcagtccttatgaggaccattgttagacgcatccgttcgacaacatatattggtgctacaattggataaagtg |
22441655 |
T |
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| Q |
367 |
ctatcgcaagatgatttatcgtcacttatcaacgtgtgtgatgagacaaaatgaacatattcagaacattctgtgacatccatctgacgtaccagagttg |
466 |
Q |
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| T |
22441656 |
ctatcgcaagatgatttatcgtcatttatcagcgtgtgtgatgagacaaaatgaacatattcagaacattccatgacatccatctgacgtaccagagttg |
22441755 |
T |
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| Q |
467 |
actgatatctagatagactatgtattccaagaattttctgtg |
508 |
Q |
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| T |
22441756 |
actgatttctagataaattatgtattccaagatttttgtgtg |
22441797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 100 - 231
Target Start/End: Original strand, 22441412 - 22441547
Alignment:
| Q |
100 |
tatgtccgcataacaa-tggcgtgtaaccttggtacgaagggtttcgtcaccttctcctatcac--agagaaataataata-caaatttttggtcaaaat |
195 |
Q |
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| T |
22441412 |
tatgtccgcataacaaatggcgtgtaacctcggtacgaagggtttcgtcaccttctcctatcacaaagagaaataataataccaattttttggtcaagat |
22441511 |
T |
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| Q |
196 |
ttttcaagatccacaaatcactgaagaattataaga |
231 |
Q |
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| T |
22441512 |
tttccaagatccacaaatcactgaagaattacaaga |
22441547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 22441293 - 22441388
Alignment:
| Q |
7 |
aataataacttgctatgtagagtcctattatttcagttgaatcaataaaaaacaactttcattattttcttctctcaagctgagagagctatatat |
102 |
Q |
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| T |
22441293 |
aataataacttgctatgtagagtcctattatttcagttgaatcaataaaaaagaactttcattattttcttctctcaagctgagtgagttatatat |
22441388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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