View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4473-Insertion-2 (Length: 768)

Name: NF4473-Insertion-2
Description: NF4473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4473-Insertion-2
NF4473-Insertion-2
[»] chr1 (15 HSPs)
chr1 (8-497)||(15873678-15874168)
chr1 (560-768)||(15873258-15873466)
chr1 (88-174)||(15925577-15925663)
chr1 (237-312)||(15925577-15925652)
chr1 (334-378)||(9922202-9922246)
chr1 (334-372)||(8098183-8098221)
chr1 (334-379)||(38327137-38327182)
chr1 (330-374)||(33090151-33090195)
chr1 (348-399)||(6108848-6108899)
chr1 (343-374)||(40905823-40905854)
chr1 (419-454)||(43183771-43183806)
chr1 (343-377)||(41081251-41081285)
chr1 (334-399)||(8037952-8038017)
chr1 (334-379)||(16469245-16469290)
chr1 (355-384)||(46967356-46967385)
[»] chr4 (11 HSPs)
chr4 (334-454)||(29728739-29728861)
chr4 (343-400)||(12764325-12764385)
chr4 (334-406)||(28485764-28485837)
chr4 (345-382)||(47774069-47774106)
chr4 (334-378)||(23149861-23149905)
chr4 (338-378)||(50744797-50744837)
chr4 (345-376)||(20863762-20863793)
chr4 (354-384)||(50096413-50096443)
chr4 (345-378)||(18124286-18124319)
chr4 (345-378)||(22232515-22232548)
chr4 (334-379)||(56446880-56446925)
[»] chr2 (4 HSPs)
chr2 (344-453)||(16452168-16452277)
chr2 (326-378)||(2579087-2579139)
chr2 (347-401)||(43821147-43821202)
chr2 (344-403)||(26533818-26533878)
[»] chr3 (8 HSPs)
chr3 (334-406)||(46612908-46612981)
chr3 (345-379)||(53506225-53506259)
chr3 (344-377)||(54258449-54258482)
chr3 (334-378)||(20494018-20494062)
chr3 (347-382)||(26599628-26599663)
chr3 (345-379)||(223143-223177)
chr3 (345-379)||(35418065-35418099)
chr3 (345-378)||(4360389-4360422)
[»] chr7 (4 HSPs)
chr7 (330-381)||(46896119-46896170)
chr7 (334-379)||(18819454-18819499)
chr7 (344-375)||(32002086-32002117)
chr7 (344-382)||(42713649-42713687)
[»] chr5 (3 HSPs)
chr5 (343-379)||(37993617-37993653)
chr5 (343-383)||(13762199-13762239)
chr5 (345-399)||(10301392-10301446)
[»] chr6 (2 HSPs)
chr6 (334-397)||(35107966-35108029)
chr6 (328-379)||(15611892-15611943)
[»] chr8 (7 HSPs)
chr8 (334-400)||(32535467-32535533)
chr8 (344-382)||(39162249-39162287)
chr8 (334-379)||(26413393-26413438)
chr8 (334-381)||(6802056-6802103)
chr8 (344-382)||(5135244-5135282)
chr8 (344-377)||(20692883-20692916)
chr8 (345-382)||(30005763-30005800)


Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Complemental strand, 15874168 - 15873678
Alignment:
Q  8 acatctatcatcgtcatcacatcacaacaatatatataaccttcttcttctctttcattagactttactttcaacgacatacaacaccatcacactcctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15874168 acatctatcatcgtcatcacatcacaacaatatatataaccttcttcatctctttcattagactttactttcaaagacatacaacaccatcacactcctt 15874069  T
Q  108 gagtttcatcagaactttcagattcatcataattcaaggtttatacaacacccttctgcttattttatttaaactagcacaatatttgtttttctaatga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15874068 gagtttcatcagaactttcagattcatcataattcaaggtttatacaacacccttctgcttattttatttaaactaggacaatatttgtttttctaatga 15873969  T
Q  208 taaatcttagtatgataaattttagcattacactccttgagtttcagcaaaactttcagatttatcataattcaaggtttatacaacactcttttgcttc 307  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873968 taaatcttagtatgataatgtttagcattacactccttgagtttcagcaaaactttcagatttatcataattcaaggtttatacaacactcttttgcttc 15873869  T
Q  308 ttttatttaaactagttcaatatttgttttcaataacaaatgttagtatgttaattgttatgttagtt-ttttctcttcgttaggacttgaaccctgaac 406  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| |||||    
T  15873868 ttttatttaaactagtacaatatttatttttaataacaaatgttagtatgttaattgttatgttagtttttttctcttcgttagggctggaaccttgaac 15873769  T
Q  407 gttcaatttaccaacctttagctcaaaacagttgagctacccaaccccgactaatacaagacttgtacattcgcatgaatataccaaattt 497  Q
    || ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||    
T  15873768 gtccaactgaccaacctttagctcaaaacagttgagctacccaaccctgactaatacaagacttgtacatttgcatgattataccaaattt 15873678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 560 - 768
Target Start/End: Complemental strand, 15873466 - 15873258
Alignment:
Q  560 agcaataaagaaatttcatgatgaaaatggaaaaagtacaagaagtactagacccaaaaaatgtgatgaagtacatttagtactcgccccgttcaagagc 659  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15873466 agcaataaagaaatttcattaagaaaatgggaaaagtacaagaagtactagacccaaaaaatgtgatgaagtacatttagtactcg-cccgttcaagagc 15873368  T
Q  660 tgactaggacaaagccaagtaatctattcaagattgta-ttttttgtgttagtaataaatatttgtcctacgnnnnnnnnnatatttacagcgacaacta 758  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||         |||||||||||||||||||    
T  15873367 tgactaggacaaagccaagtaatctattcaagattgtatttttttgtgttagtgataaatatttgtcctacgtttttttttatatttacagcgacaacta 15873268  T
Q  759 tttatcttta 768  Q
    ||||||||||    
T  15873267 tttatcttta 15873258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 15925663 - 15925577
Alignment:
Q  88 acaacaccatcacactccttgagtttcatcagaactttcagattcatcataattcaaggtttatacaacacccttctgcttatttta 174  Q
    |||||| |||||||||| || ||||||| || ||| ||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  15925663 acaacaacatcacactctttcagtttcagcacaaccttcagattcatcataattcaaggtttatacaacacccttttgtttatttta 15925577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 15925652 - 15925577
Alignment:
Q  237 acactccttgagtttcagcaaaactttcagatttatcataattcaaggtttatacaacactcttttgcttctttta 312  Q
    |||||| || |||||||||| ||| |||||||| |||||||||||||||||||||||||| |||||| || |||||    
T  15925652 acactctttcagtttcagcacaaccttcagattcatcataattcaaggtttatacaacacccttttgtttatttta 15925577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 334 - 378
Target Start/End: Complemental strand, 9922246 - 9922202
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagttttt 378  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||    
T  9922246 tttttaatgacaaatgttagtatgttaattgttatgttagttttt 9922202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 8098183 - 8098221
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgtta 372  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  8098183 ttttcaataataaatgttagtatgttaattgttatgtta 8098221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 38327182 - 38327137
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagtttttt 379  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||    
T  38327182 tttttaataacaaatattagtatgttaattgttatgttagtatttt 38327137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 33090151 - 33090195
Alignment:
Q  330 tttgttttcaataacaaatgttagtatgttaattgttatgttagt 374  Q
    |||||||| |||| |||||||||||||||||| ||||||||||||    
T  33090151 tttgttttaaatatcaaatgttagtatgttaactgttatgttagt 33090195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 399
Target Start/End: Original strand, 6108848 - 6108899
Alignment:
Q  348 tgttagtatgttaattgttatgttagttttttctcttcgttaggacttgaac 399  Q
    ||||| |||||||||| |||||||||||||||||||| || || ||||||||    
T  6108848 tgttaatatgttaattattatgttagttttttctctttgtcagaacttgaac 6108899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 374
Target Start/End: Complemental strand, 40905854 - 40905823
Alignment:
Q  343 acaaatgttagtatgttaattgttatgttagt 374  Q
    ||||||||||||||||||||||||||||||||    
T  40905854 acaaatgttagtatgttaattgttatgttagt 40905823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 454
Target Start/End: Original strand, 43183771 - 43183806
Alignment:
Q  419 aacctttagctcaaaacagttgagctacccaacccc 454  Q
    ||||||||||||||| ||||||||||||||||||||    
T  43183771 aacctttagctcaaaccagttgagctacccaacccc 43183806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 41081285 - 41081251
Alignment:
Q  343 acaaatgttagtatgttaattgttatgttagtttt 377  Q
    |||||||||||||| ||||||||||||||||||||    
T  41081285 acaaatgttagtattttaattgttatgttagtttt 41081251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 8037952 - 8038017
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagttttttctcttcgttaggacttgaac 399  Q
    |||| ||| |||| |||||||| |||||||||||||||||||||| ||| | || | |||||||||    
T  8037952 ttttaaatgacaattgttagtacgttaattgttatgttagtttttactccttgtcacgacttgaac 8038017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 16469290 - 16469245
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagtttttt 379  Q
    |||| ||| |||||| |||||| |||||||||||||||||||||||    
T  16469290 ttttgaatgacaaatattagtaggttaattgttatgttagtttttt 16469245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 384
Target Start/End: Original strand, 46967356 - 46967385
Alignment:
Q  355 atgttaattgttatgttagttttttctctt 384  Q
    ||||||||||||||||||||||||||||||    
T  46967356 atgttaattgttatgttagttttttctctt 46967385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 334 - 454
Target Start/End: Original strand, 29728739 - 29728861
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagttttttctcttcgt--taggacttgaaccctgaacgttcaatttaccaacctttagctca 431  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||| ||| | |  ||||||||||||||||||  | ||| |    |||| ||||||||    
T  29728739 tttttaatgacaagtgttagtatgttaattgttatgttagttttttttctccttaataggacttgaaccctgaatctccaactccttaacccttagctca 29728838  T
Q  432 aaacagttgagctacccaacccc 454  Q
    || ||||||||||||||||||||    
T  29728839 aaccagttgagctacccaacccc 29728861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 12764385 - 12764325
Alignment:
Q  343 acaaatgttagtatgttaattgttatgttag---ttttttctcttcgttaggacttgaacc 400  Q
    |||||||||| ||||||||||||||| ||||   |||||||||||||||| ||||||||||    
T  12764385 acaaatgttattatgttaattgttatattagtatttttttctcttcgttatgacttgaacc 12764325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 28485837 - 28485764
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagt-tttttctcttcgttaggacttgaaccctgaac 406  Q
    |||| ||| |||||||||||||||||||||||||||||| | |||||||| | || | ||||||||| ||||||    
T  28485837 tttttaatgacaaatgttagtatgttaattgttatgttaatatttttctccttgtcatgacttgaacactgaac 28485764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 47774069 - 47774106
Alignment:
Q  345 aaatgttagtatgttaattgttatgttagttttttctc 382  Q
    |||||||||||||||||||||||||||||| |||||||    
T  47774069 aaatgttagtatgttaattgttatgttagtattttctc 47774106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 23149861 - 23149905
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagttttt 378  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||    
T  23149861 tttttaatgacaaatgttagtatgttaattgttatgttatttttt 23149905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 50744837 - 50744797
Alignment:
Q  338 caataacaaatgttagtatgttaattgttatgttagttttt 378  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  50744837 caatgacaaatgttagcatgttaattgttatgttagttttt 50744797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 20863793 - 20863762
Alignment:
Q  345 aaatgttagtatgttaattgttatgttagttt 376  Q
    ||||||||||||||||||||||||||||||||    
T  20863793 aaatgttagtatgttaattgttatgttagttt 20863762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 384
Target Start/End: Complemental strand, 50096443 - 50096413
Alignment:
Q  354 tatgttaattgttatgttagttttttctctt 384  Q
    |||||||||||||||||||||||||||||||    
T  50096443 tatgttaattgttatgttagttttttctctt 50096413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 18124286 - 18124319
Alignment:
Q  345 aaatgttagtatgttaattgttatgttagttttt 378  Q
    ||||||||| ||||||||||||||||||||||||    
T  18124286 aaatgttagcatgttaattgttatgttagttttt 18124319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 378
Target Start/End: Complemental strand, 22232548 - 22232515
Alignment:
Q  345 aaatgttagtatgttaattgttatgttagttttt 378  Q
    |||||||||| |||||||||||||||||||||||    
T  22232548 aaatgttagtttgttaattgttatgttagttttt 22232515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 56446880 - 56446925
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagtttttt 379  Q
    |||| ||| |||||||||||||||||||||| ||||||||| ||||    
T  56446880 tttttaatgacaaatgttagtatgttaattgatatgttagtatttt 56446925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 344 - 453
Target Start/End: Original strand, 16452168 - 16452277
Alignment:
Q  344 caaatgttagtatgttaattgttatgttagttttttctcttcgttaggacttgaaccctgaacgttcaatttaccaacctttagctcaaaacagttgagc 443  Q
    ||||||||||||||||| |||||| |||||||||||||| | | ||||||||||||||   || | ||| ||   |||| |||||||||| |||||||||    
T  16452168 caaatgttagtatgttatttgttacgttagttttttctccttgctaggacttgaacccaagacctccaacttttgaacccttagctcaaaccagttgagc 16452267  T
Q  444 tacccaaccc 453  Q
    ||||||||||    
T  16452268 tacccaaccc 16452277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 2579139 - 2579087
Alignment:
Q  326 aatatttgttttcaataacaaatgttagtatgttaattgttatgttagttttt 378  Q
    ||||||| |||||||| | ||||||||||||| ||||||||||||||||||||    
T  2579139 aatattttttttcaatgataaatgttagtatgctaattgttatgttagttttt 2579087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 43821147 - 43821202
Alignment:
Q  347 atgttagtatgttaattgttatgttagttttttctcttc-gttaggacttgaaccc 401  Q
    ||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||    
T  43821147 atgttagtatgttaattattatgttaattttttcttttctgttaggacttgaaccc 43821202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 26533878 - 26533818
Alignment:
Q  344 caaatgttagtatgttaattgttatgttagttttttct-cttcgttaggacttgaaccctg 403  Q
    ||||||||||||| ||| ||||||||||||| |||||| ||||| |||| |||||||||||    
T  26533878 caaatgttagtatattagttgttatgttagtattttctccttcgctagggcttgaaccctg 26533818  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 46612908 - 46612981
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagttttttc-tcttcgttaggacttgaaccctgaac 406  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||||| |||| |||| ||||||| ||||||||    
T  46612908 tttttaataacaaatgttaatatgttaattgttatgttagtattttcatctttgttaagacttgagccctgaac 46612981  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 53506259 - 53506225
Alignment:
Q  345 aaatgttagtatgttaattgttatgttagtttttt 379  Q
    |||||||||||||||||||||||||||||||||||    
T  53506259 aaatgttagtatgttaattgttatgttagtttttt 53506225  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 54258482 - 54258449
Alignment:
Q  344 caaatgttagtatgttaattgttatgttagtttt 377  Q
    ||||||||||||||||||||||||||||||||||    
T  54258482 caaatgttagtatgttaattgttatgttagtttt 54258449  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 334 - 378
Target Start/End: Complemental strand, 20494062 - 20494018
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagttttt 378  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||||    
T  20494062 tttttaatgacaaatgttagtatgttaattattatgttagttttt 20494018  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 382
Target Start/End: Complemental strand, 26599663 - 26599628
Alignment:
Q  347 atgttagtatgttaattgttatgttagttttttctc 382  Q
    |||||||||||||||||||||||||||| |||||||    
T  26599663 atgttagtatgttaattgttatgttagtattttctc 26599628  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 223177 - 223143
Alignment:
Q  345 aaatgttagtatgttaattgttatgttagtttttt 379  Q
    |||||||||||||||||||||| ||||||||||||    
T  223177 aaatgttagtatgttaattgttgtgttagtttttt 223143  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 345 - 379
Target Start/End: Original strand, 35418065 - 35418099
Alignment:
Q  345 aaatgttagtatgttaattgttatgttagtttttt 379  Q
    |||||||||||||||||||||||||||||| ||||    
T  35418065 aaatgttagtatgttaattgttatgttagtatttt 35418099  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 4360389 - 4360422
Alignment:
Q  345 aaatgttagtatgttaattgttatgttagttttt 378  Q
    ||||||||| ||||||||||||||||||||||||    
T  4360389 aaatgttagcatgttaattgttatgttagttttt 4360422  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 46896119 - 46896170
Alignment:
Q  330 tttgttttcaataacaaatgttagtatgttaattgttatgttagttttttct 381  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  46896119 tttgtttttaatgacaaatgttagtatgttaattgttattttagttttttct 46896170  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 18819454 - 18819499
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagtttttt 379  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  18819454 tttttaataataaatgttagtatgttaattgttatattagtttttt 18819499  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 32002086 - 32002117
Alignment:
Q  344 caaatgttagtatgttaattgttatgttagtt 375  Q
    ||||||||||||||||||||||||||||||||    
T  32002086 caaatgttagtatgttaattgttatgttagtt 32002117  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 42713687 - 42713649
Alignment:
Q  344 caaatgttagtatgttaattgttatgttagttttttctc 382  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  42713687 caaatgttagtatgttgattgatatgttagttttttctc 42713649  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 37993653 - 37993617
Alignment:
Q  343 acaaatgttagtatgttaattgttatgttagtttttt 379  Q
    |||||||||||||||||||||||||||||||||||||    
T  37993653 acaaatgttagtatgttaattgttatgttagtttttt 37993617  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 383
Target Start/End: Original strand, 13762199 - 13762239
Alignment:
Q  343 acaaatgttagtatgttaattgttatgttagttttttctct 383  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  13762199 acaaatattaatatgttaattgttatgttagttttttctct 13762239  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 10301392 - 10301446
Alignment:
Q  345 aaatgttagtatgttaattgttatgttagttttttctcttcgttaggacttgaac 399  Q
    ||||||||||||||||||| ||||||||| |||||||| | || || ||||||||    
T  10301392 aaatgttagtatgttaattattatgttagatttttctccttgtcagaacttgaac 10301446  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 35108029 - 35107966
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagttttttctcttcgttaggacttga 397  Q
    |||| ||| ||||||||||||||||||||| |||| ||||||||||||| | ||||||| ||||    
T  35108029 tttttaatgacaaatgttagtatgttaattattatattagttttttctccttgttaggatttga 35107966  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 15611943 - 15611892
Alignment:
Q  328 tatttgttttcaataacaaatgttagtatgttaattgttatgttagtttttt 379  Q
    ||||| |||| ||||| |||||||||||| ||||||||||||||| ||||||    
T  15611943 tatttattttgaataaaaaatgttagtatattaattgttatgttattttttt 15611892  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 334 - 400
Target Start/End: Complemental strand, 32535533 - 32535467
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagttttttctcttcgttaggacttgaacc 400  Q
    |||| ||| |||||||||| |||||||||||||||||||| |||||||| | || | ||||||||||    
T  32535533 ttttgaatgacaaatgttaatatgttaattgttatgttagctttttctccttgtcaagacttgaacc 32535467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 39162287 - 39162249
Alignment:
Q  344 caaatgttagtatgttaattgttatgttagttttttctc 382  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  39162287 caaatgttagtatgttaattgttatgttagtattttctc 39162249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 26413393 - 26413438
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagtttttt 379  Q
    |||| ||| ||||||||||||||||||||||||||||||| |||||    
T  26413393 ttttgaatgacaaatgttagtatgttaattgttatgttagcttttt 26413438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 6802103 - 6802056
Alignment:
Q  334 ttttcaataacaaatgttagtatgttaattgttatgttagttttttct 381  Q
    ||||||||  |||| |||||||||||||||||||||||||| ||||||    
T  6802103 ttttcaatggcaaacgttagtatgttaattgttatgttagtattttct 6802056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 5135282 - 5135244
Alignment:
Q  344 caaatgttagtatgttaattgttatgttagttttttctc 382  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  5135282 caaatgttagtatgttaattgtaatgttagtattttctc 5135244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 20692916 - 20692883
Alignment:
Q  344 caaatgttagtatgttaattgttatgttagtttt 377  Q
    ||||||||| ||||||||||||||||||||||||    
T  20692916 caaatgttaatatgttaattgttatgttagtttt 20692883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 382
Target Start/End: Complemental strand, 30005800 - 30005763
Alignment:
Q  345 aaatgttagtatgttaattgttatgttagttttttctc 382  Q
    |||||||| | |||||||||||||||||||||||||||    
T  30005800 aaatgttactttgttaattgttatgttagttttttctc 30005763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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