View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4473-Insertion-3 (Length: 330)
Name: NF4473-Insertion-3
Description: NF4473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4473-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 323
Target Start/End: Original strand, 41217135 - 41217450
Alignment:
| Q |
8 |
gcaaggttggatgaaatcaagtaacaattgatatcagtgcttctaacagtaccaaattacatgaaaagagatatatataacttggttcaaggttacctca |
107 |
Q |
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| T |
41217135 |
gcaaggttggatgaaatcaagtaacaattgatatcagtgcgtctaacagtaccaaattacatgaaaagagatatatataacttggttcaaggttacctca |
41217234 |
T |
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| Q |
108 |
actactaagtctagtgtccattaataactccttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttcagatgttggtacaatagaatcat |
207 |
Q |
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| T |
41217235 |
actgctaagtctagtgtccattaataactccttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttcagatgttggtacaatagaatcat |
41217334 |
T |
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| Q |
208 |
ctaggaaagggctccagaagccaccaggaccagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctgtcgtcttcccc |
307 |
Q |
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| T |
41217335 |
ctaggaaagggctccagaagccaccaggaccagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctccgtcgtcttcccc |
41217434 |
T |
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| Q |
308 |
cgttttgattttcttc |
323 |
Q |
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| T |
41217435 |
cgttttgattttcttc |
41217450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 135 - 323
Target Start/End: Original strand, 41223043 - 41223230
Alignment:
| Q |
135 |
ctccttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttcagatgttggtacaatagaatcatctaggaaagggctccagaagccaccag |
234 |
Q |
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| T |
41223043 |
ctccttcattgatggatattgaaaa-tgcttcggaccatttcctcttttcagatgccggtacaacagaatcatcgaggaaagggttccagaagcctctag |
41223141 |
T |
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| Q |
235 |
gaccagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctgtcgtcttcccccgttttgattttcttc |
323 |
Q |
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| T |
41223142 |
gatcagacaaaacccagctcacttttgttggtggtcttgctaagttatggatggaacctctatcgtcttcccctattttgattttcttc |
41223230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 135 - 323
Target Start/End: Complemental strand, 16233977 - 16233789
Alignment:
| Q |
135 |
ctccttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttc-agatgttggtacaatagaatcatctaggaaagggctccagaagccacca |
233 |
Q |
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| T |
16233977 |
ctccttcattgatggatattgaaaa-tgcttgggaccatttcctcttttccagatgccggtacaatagaatcatcgaggatagggttccagaagcctcta |
16233879 |
T |
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| Q |
234 |
ggaccagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctgtcgtcttcccccgttttgattttcttc |
323 |
Q |
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| T |
16233878 |
ggatcagacaaaacccagcttacttttgttggtagtcttgctaagttatggatggaatctttatcggcttcccctattttgattttcttc |
16233789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 139 - 323
Target Start/End: Complemental strand, 1598606 - 1598423
Alignment:
| Q |
139 |
ttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttcagatgttggtacaatagaatcatctaggaaagggctccagaagccaccaggacc |
238 |
Q |
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|||||||| |||||| ||||| || |||| ||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||| | |||| |
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| T |
1598606 |
ttcattgatggatatcgaaaa-tgcttcggaccatttcctcttttcagatgctggtacaatataatcatctaggaaagggttccagaagccctcgggact |
1598508 |
T |
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| Q |
239 |
agacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctgtcgtcttcccccgttttgattttcttc |
323 |
Q |
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| T |
1598507 |
agacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctatcgtcttcccccgttttgattttcttc |
1598423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 1598734 - 1598698
Alignment:
| Q |
15 |
tggatgaaatcaagtaacaattgatatcagtgcttct |
51 |
Q |
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| T |
1598734 |
tggatgaaatcaagtaacaagtgatatcagtgtttct |
1598698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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