View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4473-Insertion-4 (Length: 248)
Name: NF4473-Insertion-4
Description: NF4473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4473-Insertion-4 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0386 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 6073489 - 6073248
Alignment:
| Q |
7 |
ataaatgagacaatagggggtatgtgtttgttgtacctactcctcaggaagtggattacatctttgttatcaattaagaaaactagacataaccatttca |
106 |
Q |
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| T |
6073489 |
ataaataagacaatagggggtatgtgtttgttgtacctactcctcaggaagtggattacatctttgttatcaattaagaaaactagacataactatttca |
6073390 |
T |
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| Q |
107 |
ataaactttattagttcattgctttcataataaagagatattggatgaggattggataatctgcatcctccggtctagaacaatatatttgttatgttta |
206 |
Q |
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| T |
6073389 |
ataaactttattagttcattgctttcataataaagagatattgggtaaggattggataatctgcatcctgcggtctaaaacaatatatttgttgtgtcta |
6073290 |
T |
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| Q |
207 |
gaccttaggatgcagattaccttattcttatcaccaatgtag |
248 |
Q |
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| T |
6073289 |
gaccttaggatacagattaccctattcttatcaccaatgtag |
6073248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 248
Target Start/End: Complemental strand, 6068962 - 6068782
Alignment:
| Q |
67 |
tctttgttatcaattaagaaaactagacataaccatttcaata--aactttattagttcattgctttcataataaagagatattggatgaggattggata |
164 |
Q |
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| T |
6068962 |
tctttattaccaattaagaaaaccggacatgatcatttcaatataaactttattaattcattgcttttataa---agagctattgggtgagaattggata |
6068866 |
T |
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| Q |
165 |
atctgcatcctccggtctagaacaatatatttgttatgtttagaccttaggatgcagattaccttattcttatcaccaatgtag |
248 |
Q |
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| T |
6068865 |
atctgcatcctgaggtctagaacaatatatttgttgtgtctagaccttaggatgcagattacctcattcttatcaccaatgtag |
6068782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 16310 - 16200
Alignment:
| Q |
136 |
ataaagagatattggatgaggattggataatctgcatcctccggtctagaacaatatatttgttatgtttagaccttaggatgcagattaccttattctt |
235 |
Q |
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| T |
16310 |
ataaagaactattgggtgaggattggataatctgcattctgaggtctagaacaatatatttgttgtgtctaatccttagaatgaagattacctcattctt |
16211 |
T |
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| Q |
236 |
atcaccaatgt |
246 |
Q |
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| T |
16210 |
atcaccaatgt |
16200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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