View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4473_high_1 (Length: 388)

Name: NF4473_high_1
Description: NF4473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4473_high_1
NF4473_high_1
[»] scaffold0037 (4 HSPs)
scaffold0037 (18-281)||(102937-103203)
scaffold0037 (18-278)||(32361-32607)
scaffold0037 (307-372)||(102881-102946)
scaffold0037 (307-372)||(32601-32666)
[»] chr6 (15 HSPs)
chr6 (22-191)||(10426956-10427125)
chr6 (223-281)||(10427124-10427182)
chr6 (307-372)||(10427173-10427238)
chr6 (307-347)||(6299513-6299553)
chr6 (307-347)||(6306323-6306363)
chr6 (307-354)||(19602199-19602246)
chr6 (307-347)||(2140499-2140539)
chr6 (313-349)||(29711261-29711297)
chr6 (310-341)||(1893390-1893421)
chr6 (308-343)||(17422274-17422309)
chr6 (307-354)||(30866162-30866209)
chr6 (310-341)||(33135839-33135870)
chr6 (316-358)||(19315821-19315863)
chr6 (307-347)||(17168895-17168935)
chr6 (307-355)||(31579243-31579291)
[»] chr3 (5 HSPs)
chr3 (307-343)||(40150589-40150625)
chr3 (307-353)||(18180534-18180580)
chr3 (308-342)||(25652050-25652084)
chr3 (310-343)||(9210846-9210879)
chr3 (307-347)||(52369776-52369816)
[»] chr1 (6 HSPs)
chr1 (307-354)||(42325554-42325601)
chr1 (307-349)||(3921666-3921708)
chr1 (307-342)||(11571591-11571626)
chr1 (307-342)||(40747791-40747826)
chr1 (307-340)||(2471231-2471264)
chr1 (307-347)||(40686776-40686816)
[»] chr2 (8 HSPs)
chr2 (307-349)||(18570971-18571013)
chr2 (307-343)||(40681987-40682023)
chr2 (307-342)||(30563415-30563450)
chr2 (311-349)||(2073941-2073979)
chr2 (307-341)||(25544488-25544522)
chr2 (307-343)||(10535777-10535813)
chr2 (308-340)||(27084270-27084302)
chr2 (307-343)||(31026700-31026736)
[»] chr8 (8 HSPs)
chr8 (311-347)||(9936815-9936851)
chr8 (307-350)||(27733845-27733888)
chr8 (308-347)||(34739080-34739119)
chr8 (307-349)||(31586295-31586337)
chr8 (307-341)||(34201064-34201098)
chr8 (307-340)||(12559124-12559157)
chr8 (307-340)||(12606847-12606880)
chr8 (307-340)||(29198497-29198530)
[»] chr7 (8 HSPs)
chr7 (307-339)||(30516375-30516407)
chr7 (307-343)||(38134424-38134460)
chr7 (307-342)||(44172908-44172943)
chr7 (311-341)||(41099763-41099793)
chr7 (307-336)||(35917398-35917427)
chr7 (307-343)||(3520360-3520396)
chr7 (309-341)||(16809864-16809896)
chr7 (313-345)||(29769328-29769360)
[»] chr5 (9 HSPs)
chr5 (307-343)||(11596473-11596509)
chr5 (307-343)||(32630753-32630789)
chr5 (307-354)||(2335612-2335659)
chr5 (308-343)||(28296333-28296368)
chr5 (307-354)||(43208292-43208339)
chr5 (307-353)||(18607115-18607161)
chr5 (307-341)||(25863211-25863245)
chr5 (307-348)||(40097618-40097659)
chr5 (307-343)||(38749581-38749617)
[»] chr4 (11 HSPs)
chr4 (307-343)||(18513259-18513295)
chr4 (307-342)||(5654609-5654644)
chr4 (307-342)||(10546154-10546189)
chr4 (307-341)||(38178621-38178655)
chr4 (307-341)||(40224549-40224583)
chr4 (307-352)||(5176980-5177025)
chr4 (311-343)||(14465316-14465348)
chr4 (307-347)||(19230327-19230367)
chr4 (307-343)||(20119950-20119986)
chr4 (307-343)||(34589724-34589760)
chr4 (310-342)||(43188618-43188650)
[»] scaffold0011 (1 HSPs)
scaffold0011 (307-341)||(240039-240073)
[»] scaffold0571 (1 HSPs)
scaffold0571 (310-342)||(7696-7728)
[»] scaffold0316 (1 HSPs)
scaffold0316 (307-347)||(16137-16177)


Alignment Details
Target: scaffold0037 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 103203 - 102937
Alignment:
Q  18 tgtggaatatgctccactttacactcttcgactttatgaaaaaaccgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  103203 tgtggaatatgctccactttacactcttcgactttatgaaaaaaacgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgat 103104  T
Q  118 ttcccgtacactcacacttgctgaaagaattgtcgacattcaagtaatgcttacattccattctccctgtgtaacagaaaact---nnnnnnnnttaccc 214  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||           ||||||    
T  103103 ttcccttacacgcacacttgctgaaaggattgtcgacattcaagtaatgcttactttccattctccctgtgtaacagaaaactaaaaaaaaaaattaccc 103004  T
Q  215 aacaggtaaatagaggtcgagctcagtagcatcgacatttctgatcgaacataaaaattacattgaa 281  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  103003 aacaggtaaatagaggccgagctcagtagcatcgacatttctgatcgaacataaaaattacattgaa 102937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 32361 - 32607
Alignment:
Q  18 tgtggaatatgctccactttacactcttcgactttatgaaaaaaccgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361 tgtggaatatgctccactttacactcttcgactttatgaaaaaaacgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgat 32460  T
Q  118 ttcccgtacactcacacttgctgaaagaattgtcgacattcaagtaatgcttacattccattctccctgtgtaacagaaaact-nnnnnnnnttacccaa 216  Q
    |||||                |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||         ||||||||    
T  32461 ttccc---------------ttgaaaggattgtcgacatacaagtaatgcttactttccattctccctgtgtaacagaaaactaaaaaaaaattacccaa 32545  T
Q  217 caggtaaatagaggtcgagctcagtagcatcgacatttctgatcgaacataaaaattacatt 278  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32546 caggtaaatagaggccgagctcagtagcatcgacatttctgatcgaacataaaaattacatt 32607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 102946 - 102881
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtgtgggtgcttgataggtttat 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  102946 ttacattgaattatatcattttctcaaattattatcgatgttggtgtgggtgcttgatagggttat 102881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 32601 - 32666
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtgtgggtgcttgataggtttat 372  Q
    ||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  32601 ttacattaaattacatcattttctcaaattattatcaatgttgatgtgggtgcttgatagggttat 32666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 10426956 - 10427125
Alignment:
Q  22 gaatatgctccactttacactcttcgactttatgaaaaaaccgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgatttcc 121  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10426956 gaatatgctccactttacactcttcgactttatgaaaataacgagacaggaccctaactttacactcttgttcaacttcaatctttctaagatgatttcc 10427055  T
Q  122 cgtacactcacacttgctgaaagaattgtcgacattcaagtaatgcttacattccattctccctgtgtaa 191  Q
    | ||||| || |||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||    
T  10427056 cttacacacatacttgctgaaaggattgtcgacatacaagtaatgcttactttccattctccctgtgtaa 10427125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 10427124 - 10427182
Alignment:
Q  223 aatagaggtcgagctcagtagcatcgacatttctgatcgaacataaaaattacattgaa 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10427124 aatagaggtcgagctcagtagcatcgacatttctgatcgaacataacaattacattgaa 10427182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 10427173 - 10427238
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtgtgggtgcttgataggtttat 372  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  10427173 ttacattgaattatatcattttgtcaagttattatcgatgttggtgtgggtgcttgatagggttat 10427238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 6299553 - 6299513
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgt 347  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  6299553 ttacattgaattatatcattttctcaaattattatccatgt 6299513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 6306363 - 6306323
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgt 347  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  6306363 ttacattgaattatatcattttctcaaattattatccatgt 6306323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 19602199 - 19602246
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtgtg 354  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||||||    
T  19602199 ttacactgaattatatcattttctcaaattattatcagtgttggtgtg 19602246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 2140499 - 2140539
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgt 347  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  2140499 ttacattgaattatgtcattttctcaaattattatcaatgt 2140539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 29711297 - 29711261
Alignment:
Q  313 tgaattatatcattttctcaaattattatcgatgttg 349  Q
    |||||||| ||||||||||||||||||||||||||||    
T  29711297 tgaattatgtcattttctcaaattattatcgatgttg 29711261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 341
Target Start/End: Original strand, 1893390 - 1893421
Alignment:
Q  310 cattgaattatatcattttctcaaattattat 341  Q
    ||||||||||||||||||||||||||||||||    
T  1893390 cattgaattatatcattttctcaaattattat 1893421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 17422274 - 17422309
Alignment:
Q  308 tacattgaattatatcattttctcaaattattatcg 343  Q
    |||||| |||||||||||||||||||||||||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcg 17422309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 30866162 - 30866209
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtgtg 354  Q
    |||||||||||||| | ||||||||||||||||| || ||||||||||    
T  30866162 ttacattgaattatgtgattttctcaaattattagcggtgttggtgtg 30866209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 341
Target Start/End: Complemental strand, 33135870 - 33135839
Alignment:
Q  310 cattgaattatatcattttctcaaattattat 341  Q
    ||||||||||||||||||||||||||||||||    
T  33135870 cattgaattatatcattttctcaaattattat 33135839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 19315821 - 19315863
Alignment:
Q  316 attatatcattttctcaaattattatcgatgttggtgtgggtg 358  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||    
T  19315821 attatatcattttctcaaattattgtcggtgttggtgtcggtg 19315863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 17168935 - 17168895
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgt 347  Q
    |||||||||||||| ||||||| ||||||||||||| ||||    
T  17168935 ttacattgaattatgtcattttttcaaattattatcaatgt 17168895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 31579243 - 31579291
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtgtgg 355  Q
    ||||| |||||||| | ||||||||||||||||| || |||||||||||    
T  31579243 ttacactgaattatgtgattttctcaaattattaacggtgttggtgtgg 31579291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 40150589 - 40150625
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    |||||||||||||||||||||||||||||||||||||    
T  40150589 ttacattgaattatatcattttctcaaattattatcg 40150625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 18180580 - 18180534
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtgt 353  Q
    ||||||| |||||| |||||||||||||||||||| |||||| ||||    
T  18180580 ttacatttaattatttcattttctcaaattattattgatgttagtgt 18180534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 25652050 - 25652084
Alignment:
Q  308 tacattgaattatatcattttctcaaattattatc 342  Q
    |||| ||||||||||||||||||||||||||||||    
T  25652050 tacactgaattatatcattttctcaaattattatc 25652084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 9210846 - 9210879
Alignment:
Q  310 cattgaattatatcattttctcaaattattatcg 343  Q
    ||||||||||| ||||||||||||||||||||||    
T  9210846 cattgaattatgtcattttctcaaattattatcg 9210879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 52369816 - 52369776
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgt 347  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  52369816 ttacattgaattatgtaattttctcaaattattatccatgt 52369776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 42325601 - 42325554
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtgtg 354  Q
    ||||| |||||||| |||||||||||||||||||||| ||||||||||    
T  42325601 ttacactgaattatgtcattttctcaaattattatcggtgttggtgtg 42325554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 3921708 - 3921666
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttg 349  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  3921708 ttacattgaattatgtcattttctcaaattattattgatgttg 3921666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 11571626 - 11571591
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatc 342  Q
    |||||||||||||| |||||||||||||||||||||    
T  11571626 ttacattgaattatgtcattttctcaaattattatc 11571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 342
Target Start/End: Original strand, 40747791 - 40747826
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatc 342  Q
    |||||||||||||| |||||||||||||||||||||    
T  40747791 ttacattgaattatgtcattttctcaaattattatc 40747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 340
Target Start/End: Original strand, 2471231 - 2471264
Alignment:
Q  307 ttacattgaattatatcattttctcaaattatta 340  Q
    |||||||||||||| |||||||||||||||||||    
T  2471231 ttacattgaattatctcattttctcaaattatta 2471264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 40686776 - 40686816
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgt 347  Q
    |||||||||||||||||||||| ||||| | ||||||||||    
T  40686776 ttacattgaattatatcattttatcaaaattttatcgatgt 40686816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 18571013 - 18570971
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttg 349  Q
    |||||||||||||| |||||||||||||||||||||| |||||    
T  18571013 ttacattgaattatgtcattttctcaaattattatcggtgttg 18570971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 40682023 - 40681987
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    |||||||||||||| ||||||||||||||||||||||    
T  40682023 ttacattgaattatgtcattttctcaaattattatcg 40681987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 30563450 - 30563415
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatc 342  Q
    |||||||||||||| |||||||||||||||||||||    
T  30563450 ttacattgaattatgtcattttctcaaattattatc 30563415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 2073979 - 2073941
Alignment:
Q  311 attgaattatatcattttctcaaattattatcgatgttg 349  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  2073979 attgaattatgttattttctcaaattattatcgatgttg 2073941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 25544522 - 25544488
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattat 341  Q
    ||||| |||||||||||||||||||||||||||||    
T  25544522 ttacactgaattatatcattttctcaaattattat 25544488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 10535777 - 10535813
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  10535777 ttacactgaattatgtcattttctcaaattattatcg 10535813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 27084302 - 27084270
Alignment:
Q  308 tacattgaattatatcattttctcaaattatta 340  Q
    ||||||||||||||| |||||||||||||||||    
T  27084302 tacattgaattatatgattttctcaaattatta 27084270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 31026736 - 31026700
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  31026736 ttacattgaattatgtcattttcttaaattattatcg 31026700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 9936851 - 9936815
Alignment:
Q  311 attgaattatatcattttctcaaattattatcgatgt 347  Q
    |||||||||||||||||||| ||||||||||||||||    
T  9936851 attgaattatatcattttcttaaattattatcgatgt 9936815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 27733888 - 27733845
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttgg 350  Q
    |||||||||||||||||||||||||||| | |||||| ||||||    
T  27733888 ttacattgaattatatcattttctcaaaattttatcggtgttgg 27733845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 34739080 - 34739119
Alignment:
Q  308 tacattgaattatatcattttctcaaattattatcgatgt 347  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  34739080 tacattgaattatgtcattttctcatattattatcgatgt 34739119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 31586295 - 31586337
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttg 349  Q
    |||||||  ||||||||||||||||||||||||||| ||||||    
T  31586295 ttacattatattatatcattttctcaaattattatcaatgttg 31586337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 34201064 - 34201098
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattat 341  Q
    |||||||||||||| ||||||||||||||||||||    
T  34201064 ttacattgaattatgtcattttctcaaattattat 34201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 340
Target Start/End: Original strand, 12559124 - 12559157
Alignment:
Q  307 ttacattgaattatatcattttctcaaattatta 340  Q
    ||||| ||||||||||||||||||||||||||||    
T  12559124 ttacactgaattatatcattttctcaaattatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 340
Target Start/End: Original strand, 12606847 - 12606880
Alignment:
Q  307 ttacattgaattatatcattttctcaaattatta 340  Q
    |||||||||||||||| |||||||||||||||||    
T  12606847 ttacattgaattatatgattttctcaaattatta 12606880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 340
Target Start/End: Original strand, 29198497 - 29198530
Alignment:
Q  307 ttacattgaattatatcattttctcaaattatta 340  Q
    |||||||||||||| |||||||||||||||||||    
T  29198497 ttacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 30516375 - 30516407
Alignment:
Q  307 ttacattgaattatatcattttctcaaattatt 339  Q
    |||||||||||||||||||||||||||||||||    
T  30516375 ttacattgaattatatcattttctcaaattatt 30516407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 38134424 - 38134460
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    |||||||||||||| ||||||||||||||||||||||    
T  38134424 ttacattgaattatgtcattttctcaaattattatcg 38134460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 342
Target Start/End: Original strand, 44172908 - 44172943
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatc 342  Q
    |||||||||||||| |||||||||||||||||||||    
T  44172908 ttacattgaattatgtcattttctcaaattattatc 44172943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 341
Target Start/End: Original strand, 41099763 - 41099793
Alignment:
Q  311 attgaattatatcattttctcaaattattat 341  Q
    |||||||||||||||||||||||||||||||    
T  41099763 attgaattatatcattttctcaaattattat 41099793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 35917398 - 35917427
Alignment:
Q  307 ttacattgaattatatcattttctcaaatt 336  Q
    ||||||||||||||||||||||||||||||    
T  35917398 ttacattgaattatatcattttctcaaatt 35917427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 3520360 - 3520396
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    |||||||||||||||| |||||||||||| |||||||    
T  3520360 ttacattgaattatatgattttctcaaatgattatcg 3520396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 16809896 - 16809864
Alignment:
Q  309 acattgaattatatcattttctcaaattattat 341  Q
    |||||||||| ||||||||||||||||||||||    
T  16809896 acattgaattttatcattttctcaaattattat 16809864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 29769360 - 29769328
Alignment:
Q  313 tgaattatatcattttctcaaattattatcgat 345  Q
    ||||||| |||||||||||||||||||||||||    
T  29769360 tgaattacatcattttctcaaattattatcgat 29769328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 11596473 - 11596509
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    |||||||||||||| ||||||||||||||||||||||    
T  11596473 ttacattgaattatgtcattttctcaaattattatcg 11596509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 32630753 - 32630789
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    |||||||||||||||| ||||||||||||||||||||    
T  32630753 ttacattgaattatataattttctcaaattattatcg 32630789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 2335659 - 2335612
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtgtg 354  Q
    ||||||||| ||| |||||||||||||||||||||| |||| ||||||    
T  2335659 ttacattgacttacatcattttctcaaattattatctatgtcggtgtg 2335612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 28296368 - 28296333
Alignment:
Q  308 tacattgaattatatcattttctcaaattattatcg 343  Q
    ||||||||||||| ||||||||||||||||||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcg 28296333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 43208292 - 43208339
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtgtg 354  Q
    |||||||||||||| |||||||||||||||| ||||| ||||| ||||    
T  43208292 ttacattgaattatgtcattttctcaaattactatcggtgttgatgtg 43208339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 18607115 - 18607161
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtgt 353  Q
    |||||||||||||| | ||||||||||||||||||| |||| |||||    
T  18607115 ttacattgaattatgttattttctcaaattattatccatgtcggtgt 18607161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 25863245 - 25863211
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattat 341  Q
    ||||| |||||||||||||||||||||||||||||    
T  25863245 ttacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 40097618 - 40097659
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgtt 348  Q
    |||||||||||||||||||||||||| |||||| ||| ||||    
T  40097618 ttacattgaattatatcattttctcagattattgtcgctgtt 40097659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 38749581 - 38749617
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  38749581 ttacattgaattatgtcattttttcaaattattatcg 38749617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 18513259 - 18513295
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    |||||||||||||| ||||||||||||||||||||||    
T  18513259 ttacattgaattatgtcattttctcaaattattatcg 18513295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 342
Target Start/End: Original strand, 5654609 - 5654644
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatc 342  Q
    |||||||||||||| |||||||||||||||||||||    
T  5654609 ttacattgaattatgtcattttctcaaattattatc 5654644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 10546189 - 10546154
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatc 342  Q
    |||||||||||||| |||||||||||||||||||||    
T  10546189 ttacattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 38178621 - 38178655
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattat 341  Q
    |||||||||||||||||||||||||||| ||||||    
T  38178621 ttacattgaattatatcattttctcaaagtattat 38178655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 40224549 - 40224583
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattat 341  Q
    ||||||||| |||||||||||||||||||||||||    
T  40224549 ttacattgacttatatcattttctcaaattattat 40224583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 5177025 - 5176980
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgttggtg 352  Q
    |||||||||||||| | ||||||||||| ||||||| |||||||||    
T  5177025 ttacattgaattatgttattttctcaaaatattatcaatgttggtg 5176980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 14465316 - 14465348
Alignment:
Q  311 attgaattatatcattttctcaaattattatcg 343  Q
    |||||||||| ||||||||||||||||||||||    
T  14465316 attgaattatgtcattttctcaaattattatcg 14465348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 19230327 - 19230367
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgt 347  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  19230327 ttacattgaattatgttattttctcaaattattatctatgt 19230367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 20119986 - 20119950
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  20119986 ttacattaaattatttcattttctcaaattattatcg 20119950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 34589724 - 34589760
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcg 343  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  34589724 ttacattgaattatgtcattttctcaaattgttatcg 34589760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 342
Target Start/End: Complemental strand, 43188650 - 43188618
Alignment:
Q  310 cattgaattatatcattttctcaaattattatc 342  Q
    ||||||||||| |||||||||||||||||||||    
T  43188650 cattgaattatgtcattttctcaaattattatc 43188618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 240039 - 240073
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattat 341  Q
    |||||||||||||||| ||||||||||||||||||    
T  240039 ttacattgaattatattattttctcaaattattat 240073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 342
Target Start/End: Complemental strand, 7728 - 7696
Alignment:
Q  310 cattgaattatatcattttctcaaattattatc 342  Q
    ||||||||||| |||||||||||||||||||||    
T  7728 cattgaattatgtcattttctcaaattattatc 7696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 16177 - 16137
Alignment:
Q  307 ttacattgaattatatcattttctcaaattattatcgatgt 347  Q
    |||| ||||||||| ||||||||| ||||||||||||||||    
T  16177 ttacgttgaattatttcattttcttaaattattatcgatgt 16137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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