View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4473_high_2 (Length: 380)
Name: NF4473_high_2
Description: NF4473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4473_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 39926247 - 39925895
Alignment:
| Q |
17 |
ataaagaattgtaatgtaataatcaaacttttgattatcgtatctgctaaatgataatacagtggtgcaattgtgcaaagataagttggccaatccatta |
116 |
Q |
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| T |
39926247 |
ataaagaattgtaatgtaataatcaaacttttgattatcgtatctgctaaatgataatacagtggtgcaattgtgcaaagataagttggccaatccatta |
39926148 |
T |
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| Q |
117 |
ctctttactttattttcctaagcaagacgtggaaaaataagagtcactttaattttgtgcattttattcaagattagattagtaactactaattgcatgt |
216 |
Q |
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| T |
39926147 |
ctctttactttattttcctaagcaagacgtggaaaaataagagtcactttaattttgtgcattttattcaagattagattagtaactactaattgcatgt |
39926048 |
T |
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| Q |
217 |
cccatgggagatgaatgctgctgaattaaatttgaatctaataaacaatggaacatgttaatgttgtaaggtttcggtggaattggaatatttctgttga |
316 |
Q |
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| T |
39926047 |
cccatgggagatgaatgctgctgaattaaatttgaatctaataaacaatgaaacatgttaatgttgtaaggtttcggtggaattggaatatttctgttga |
39925948 |
T |
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| Q |
317 |
gaaggtacgtggtgtttggttcatacagagaaagtcgcagattgtttgatgat |
369 |
Q |
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| T |
39925947 |
gaaggtacgttgtgtttggttcatacagagaaagtcgcagattgtttgatgat |
39925895 |
T |
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