View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4473_low_1 (Length: 787)
Name: NF4473_low_1
Description: NF4473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4473_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 18 - 777
Target Start/End: Complemental strand, 4223769 - 4223008
Alignment:
| Q |
18 |
atgtttattattggttacctgagaaacaacgacatggcggacgctactatccacaccatcatgctctccaaatgaatgagaatgaccatg------tcca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4223769 |
atgtttattattggttacctgagaaacaacgacatggcggacgctactatccacaccatcatgctctccaaatgaatgagaatgaccatgaccatgtcca |
4223670 |
T |
|
| Q |
112 |
tcaccatggttttgatgtgaatgtccatgctgcgacgcatgagcatgcatccccacaatatgcattccaccaccaaaagtctctccctgaacctccacaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4223669 |
tcaccatggttttgatgtgaatgtccatgttgcgacgcatgagcatgcatccccacaatatgcattccaccaccaaaagtctctccctgaacctccacaa |
4223570 |
T |
|
| Q |
212 |
tccccgatcccaacaactcctcttccaacccctcaccattaccaacaactcgtccgtgctcagcgccaccactgtcatgtgttttttggtgttgcgactc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4223569 |
tccccgatcccaacaactcctcttccaacccctcaccattaccaacaactcgtccgtgc------------ctgtcatgtgttttttggtgttgcgactc |
4223482 |
T |
|
| Q |
312 |
ataatactgtgtcgcaacaaagtcaactagaagagttaataacgcagacatcatcgcaaaaaacccggtaaatggaaactctgaccacacgtgagagtaa |
411 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4223481 |
ataatactgcgtcgcaacaaagtcaactagaagagttaataacgcagacatcatcgcaaaaaacccggtaaatggaaactctgaccacacgtgagagtaa |
4223382 |
T |
|
| Q |
412 |
gatttcaaacaactatgattcaaagctttccacgcgtcttgaagcatgtgaacaaaccccgtcgctagtatcactcctgctgcaaaagccttagctgccg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4223381 |
gatttcaaacaactatgattcaaagctttccacgcgtcttgaagcatgtgaacaaaccccgtcgctagtatcactcctgctgcaaaagccttagctgccg |
4223282 |
T |
|
| Q |
512 |
gtaaaatttcaccatcggatcgtaataatccccgccggtttcccaacaacggtacagcaattccagaaaatccagccactagaattgatgccatagcgac |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4223281 |
gtaaaatttcaccatcggatcgtaataatccccgccggtttcccaacaacggtacagcaattccagaaaatccagccactagaattgatgccatagcgac |
4223182 |
T |
|
| Q |
612 |
gaattttaagatcaaagctgctgactcatcgcgacacaggtcggactcaccgctttcgcagctcgaattcgtcatgaattcatcaaagagagtagaca-- |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4223181 |
gaattttaagatcaaagctgctgactcatcgcgacacaggtcggactcaccgctttcgcagctcgaattcgtcatgaattcatcaaagagagtagacatt |
4223082 |
T |
|
| Q |
710 |
------nnnnnnnngtgaaatgaaaaggagtagaagagggttttaggaaaagtttagaggtggaagtgatgatg |
777 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4223081 |
ttttttttttttttgtgaaatgaaaaagagaagaagagggttttaggaaaagtttagaggtggaagtggtgatg |
4223008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 184
Target Start/End: Original strand, 48080889 - 48080919
Alignment:
| Q |
154 |
gcatgcatccccacaatatgcattccaccac |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48080889 |
gcatgcatccccacaatatgcattccaccac |
48080919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University