View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4473_low_2 (Length: 558)
Name: NF4473_low_2
Description: NF4473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4473_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 24 - 405
Target Start/End: Original strand, 34327786 - 34328168
Alignment:
| Q |
24 |
cgcagatacagagaattccggtgtggtggtcgccggcaaagatactccaaccaagcaataaatttaggggttttgttaaggttgttatggagacaaaa-t |
122 |
Q |
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| T |
34327786 |
cgcagctacagagaattccggtgtggtggtcgccggcaaagatactccaaccaagcaataagtttatgggttttgttgaggttgttatggagacaaaaat |
34327885 |
T |
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| Q |
123 |
ggctggtttagtttctcaaaaagaggatcatagtgacnnnnnnnttaagagagaagttgac---tggtgattttcaaatctgatcaatctataaaataaa |
219 |
Q |
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| T |
34327886 |
ggctggtttagtttctcaaaaagaggatcatagtgacaaaaaa-ttaagagagaagttgatgattggtgtttttcaaatctgatcaatctataaaataaa |
34327984 |
T |
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| Q |
220 |
tgggtggtttttaaagagggggaagagaggatttcaatggtggctgtggtgtggtggaaggaggtctaatggtgaagttgtggtggctgaaagtattccg |
319 |
Q |
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| T |
34327985 |
tgggtggtttt-aaagagggg-aagagaggatttcaatggtggctgtggtgtggtggaaggaggtctaatggtgaagttgtggtggctggaagaattcgg |
34328082 |
T |
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| Q |
320 |
cggtaatgttcaaggaaaaagaagaagtcgcacaacaacacatggaataaaatgaaggaaagagttttaaatctgtcctttatttc |
405 |
Q |
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| T |
34328083 |
cggtaatgttcaaggaaaaagaagaagtcgcacaacaacacatggaataaaataaaggaaagagttttaaatttgtcctttatttc |
34328168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 130 - 405
Target Start/End: Original strand, 40724287 - 40724564
Alignment:
| Q |
130 |
ttagtttctcaaaaagaggatcatagtgacnnnnnnnttaagagagaagttgac---tggtgattttcaaatctgatcaatctataaaataaatgggtgg |
226 |
Q |
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| T |
40724287 |
ttagtttctcaaaaagaggatcatagtgacaaaaaa-ttaagagagaagttgatgattggtgtttttcaaatcttatcaatctataaaataaatgggtgg |
40724385 |
T |
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| Q |
227 |
tttttaaagagggggaagagaggatttcaatggtggctgtggtgtggtggaaggaggtctaatggtgaagttgtggtggctgaaagtattccgcggtaat |
326 |
Q |
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| T |
40724386 |
tttttaaagagggggaaaagaggatttcaatggtggctgtggtgtggtggaaggaggtctaatgatgaagttgtggtggctgaaagtattcggcggtaat |
40724485 |
T |
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| Q |
327 |
gttcaaggaaaaagaagaagtcgcacaacaacacatggaataaaatgaaggaaagagttttaaatctgtcctttatttc |
405 |
Q |
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| T |
40724486 |
gttcaaggaaaaagaataagtcgcacaacaacagatggaatagaataaaggaaagagttttaaatcagtcctttatttc |
40724564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 53191752 - 53191877
Alignment:
| Q |
32 |
cagagaattccggtgtggtggtcgccggcaaagatactccaaccaagcaataaatttaggggttttgttaaggttgttatggagac-aaaatggctggtt |
130 |
Q |
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||||||| ||||| |||||||| || ||||||| |||| ||| |||||||||| ||||| ||||||||| |||||| ||||||||| |||||||| |||| |
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| T |
53191752 |
cagagaactccggcgtggtggttgctggcaaagttactgcaatcaagcaataagtttagaggttttgttgaggttgctatggagacaaaaatggcaggtt |
53191851 |
T |
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| Q |
131 |
tagtttctcaaaaagaggatcatagt |
156 |
Q |
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| T |
53191852 |
tagtttctcaaaaatagaatcatagt |
53191877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 23233298 - 23233354
Alignment:
| Q |
206 |
atctataaaataaatgggtggtttttaaagagggggaagagaggatttcaatggtgg |
262 |
Q |
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| T |
23233298 |
atctagaaaataaatgggtgatttttgaagaggaagaagagaggaatttaatggtgg |
23233354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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