View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4473_low_6 (Length: 231)
Name: NF4473_low_6
Description: NF4473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4473_low_6 |
 | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14296529 - 14296309
Alignment:
| Q |
1 |
tggttgcctagacatgaagctaacaaggatgactcaacaactagccgacaagtccgtggcacgaccaatgggaattgccgaagatgtcttagttaaagtg |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14296529 |
tggtggcctagacatgaagttaacaaggatgagtctacaactagccgacaagtccgtggcacgaccaatgggaattgccgaagatgtcttagttaaagtg |
14296430 |
T |
|
| Q |
101 |
gataaatttgtgtttcccgttgactttgtggtcatggacatagaagaggacgatgatgtgccgctaattcttggtagaacattcatgctcgccgcacgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
14296429 |
gataaatttgtgtttcccgttgactttgtggtcatggacatagaagaggacgatgatgtgccgctaattcttggtagaacattcatgcttgccgcatgaa |
14296330 |
T |
|
| Q |
201 |
tgatgatagactatgatgatg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14296329 |
tgatgatagactatgatgatg |
14296309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7065064 - 7065284
Alignment:
| Q |
1 |
tggttgcctagacatgaagctaacaaggatgactcaacaactagccgacaagtccgtggcacgaccaatgggaattgccgaagatgtcttagttaaagtg |
100 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7065064 |
tggtggcctagatatgaagttaacaaggatgactttacaactagccgacaagtccgtggcacgaccaatgggaattgccgaagatgtcttagttaaagtg |
7065163 |
T |
|
| Q |
101 |
gataaatttgtgtttcccgttgactttgtggtcatggacatagaagaggacgatgatgtgccgctaattcttggtagaacattcatgctcgccgcacgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7065164 |
gataaatttgtgtttcccgttgactttgtggtcatggacatagaagaggacgatgatgtgccgctaattcttggtagaacattcatgcttgccgcacgaa |
7065263 |
T |
|
| Q |
201 |
tgatgatagactatgatgatg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7065264 |
tgatgatagactatgatgatg |
7065284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 852 - 1067
Alignment:
| Q |
6 |
gcctagacatgaagctaacaaggatgactcaacaactagccgacaagtccgtggcacgaccaatgggaattgccgaagatgtcttagttaaagtggataa |
105 |
Q |
| |
|
||||||| |||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
852 |
gcctagaaatgaagttaacaaggatgactctacaactagccgacaagtctgtggcacgaccaatgggaattgccgaagatgtcttagttaaagtggataa |
951 |
T |
|
| Q |
106 |
atttgtgtttcccgttgactttgtggtcatggacatagaagaggacgatgatgtgccgctaattcttggtagaacattcatgctcgccgcacgaatgatg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
952 |
atttgtgtttcccgttgactttgtggtcatggacatagaagaggaagatgaaatgccgctaattcttggtagaacattcatgctagccgcaagaatgatg |
1051 |
T |
|
| Q |
206 |
atagactatgatgatg |
221 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1052 |
atagactatgatgatg |
1067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 17788629 - 17788417
Alignment:
| Q |
9 |
tagacatgaagctaacaaggatgactcaacaactagccgacaagtccgtggcacgaccaatgggaattgccgaagatgtcttagttaaagtggataaatt |
108 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| |||||||||| ||| ||||||||||||| || ||||| ||| |||| |||| ||||| |||||| |
|
|
| T |
17788629 |
tagacatgaagctaacaagaatgaccttacaacttgccgacaagttcgtaacacgaccaatggggatagccgaggatatcttggttagagtgggtaaatt |
17788530 |
T |
|
| Q |
109 |
tgtgtttcccgttgactttgtggtcatggacatagaagaggacgatgatgtgccgctaattcttggtagaacattcatgctcgccgcacgaatgatgata |
208 |
Q |
| |
|
||| || ||||| ||||||||||| |||||||| ||||| || ||||||||||| | || ||||| |||||||||| ||| |||||| |||||||||| |
|
|
| T |
17788529 |
tgtattccccgtggactttgtggtgatggacattgaagaagatgatgatgtgccaatgatacttggaagaacattcaagctagccgcaagaatgatgatt |
17788430 |
T |
|
| Q |
209 |
gactatgatgatg |
221 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
17788429 |
gattatgatgatg |
17788417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 17787058 - 17787202
Alignment:
| Q |
77 |
gccgaagatgtcttagttaaagtggataaatttgtgtttcccgttgactttgtggtcatggacatagaagaggacgatgatgtgccgctaattcttggta |
176 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||| || ||| | |||||| |||| ||| |||| ||||| || ||||||| ||| | | |||| | |
|
|
| T |
17787058 |
gccgaggatgtcttggttggagtggataaatttgtattccccatggactttatggtgatgtacattgaagaagatgatgatgggccattgaaaattggaa |
17787157 |
T |
|
| Q |
177 |
gaacattcatgctcgccgcacgaatgatgatagactatgatgatg |
221 |
Q |
| |
|
||||||||||||| |||||| |||||||||| || |||||||||| |
|
|
| T |
17787158 |
gaacattcatgctagccgcaagaatgatgattgattatgatgatg |
17787202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 3 - 33
Alignment:
| Q |
191 |
gccgcacgaatgatgatagactatgatgatg |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3 |
gccgcacgaatgatgatagactatgatgatg |
33 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University