View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4474-Insertion-1 (Length: 850)

Name: NF4474-Insertion-1
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4474-Insertion-1
NF4474-Insertion-1
[»] chr1 (4 HSPs)
chr1 (8-810)||(39379318-39380119)
chr1 (99-157)||(17561094-17561152)
chr1 (115-164)||(4017084-4017133)
chr1 (99-148)||(4366834-4366883)
[»] chr4 (15 HSPs)
chr4 (28-512)||(3565059-3565537)
chr4 (30-511)||(3557042-3557517)
chr4 (535-743)||(3564787-3564992)
chr4 (100-344)||(1686634-1686872)
chr4 (558-743)||(3556769-3556954)
chr4 (553-708)||(3573456-3573610)
chr4 (558-721)||(1687154-1687317)
chr4 (434-512)||(3573296-3573374)
chr4 (99-242)||(3561306-3561443)
chr4 (434-508)||(1686950-1687024)
chr4 (557-677)||(3561795-3561915)
chr4 (8-64)||(1686542-1686598)
chr4 (263-335)||(3573134-3573206)
chr4 (280-335)||(11849195-11849250)
chr4 (299-332)||(3561512-3561545)
[»] chr7 (27 HSPs)
chr7 (99-154)||(29899044-29899099)
chr7 (99-157)||(29431340-29431398)
chr7 (102-166)||(29859109-29859173)
chr7 (115-166)||(24391072-24391123)
chr7 (99-154)||(29106484-29106539)
chr7 (115-162)||(22021051-22021098)
chr7 (120-158)||(9807511-9807549)
chr7 (108-154)||(29074731-29074777)
chr7 (115-164)||(19637584-19637633)
chr7 (115-152)||(22036779-22036816)
chr7 (127-164)||(22473492-22473529)
chr7 (99-144)||(29454445-29454490)
chr7 (102-166)||(29476676-29476740)
chr7 (101-164)||(19351386-19351449)
chr7 (280-335)||(29074553-29074608)
chr7 (280-335)||(29106288-29106343)
chr7 (99-146)||(29445989-29446036)
chr7 (115-157)||(20414576-20414618)
chr7 (290-332)||(29858913-29858955)
chr7 (280-334)||(29880752-29880806)
chr7 (99-141)||(29884949-29884991)
chr7 (291-332)||(12820674-12820715)
chr7 (115-164)||(18953272-18953321)
chr7 (115-164)||(18983319-18983368)
chr7 (115-164)||(18997965-18998014)
chr7 (115-164)||(29880931-29880980)
chr7 (280-325)||(29898858-29898903)
[»] chr3 (1 HSPs)
chr3 (113-164)||(3625418-3625469)
[»] chr5 (1 HSPs)
chr5 (99-164)||(42297807-42297872)
[»] scaffold0097 (1 HSPs)
scaffold0097 (123-161)||(16723-16761)
[»] chr6 (2 HSPs)
chr6 (109-159)||(6954856-6954906)
chr6 (115-160)||(33568660-33568705)
[»] chr2 (2 HSPs)
chr2 (123-161)||(20712884-20712922)
chr2 (115-164)||(18921091-18921140)
[»] scaffold0707 (1 HSPs)
scaffold0707 (115-160)||(5054-5099)
[»] scaffold0128 (2 HSPs)
scaffold0128 (99-164)||(3830-3895)
scaffold0128 (118-163)||(8269-8314)


Alignment Details
Target: chr1 (Bit Score: 715; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 8 - 810
Target Start/End: Original strand, 39379318 - 39380119
Alignment:
8 gagtgatcgggtcttcatcttgaatagccaaccagttaagagtgccattaagaaacaaaccagtatgatgaaattgttcaatatcacaataaagaggaac 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
39379318 gagtgatcgggtcttcatcttgaatagccaaccaattaagagtgccattaagaaacacaccagtatgatgaaattgttcaacatcacaataaagaggaac 39379417  T
108 aaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcacatgggttgtcaattcttcgtcgacgccaaggtaacgtgacgca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
39379418 aaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcacatcggttgtcaattcttcgccgacgccaaggtaacgtgacgca 39379517  T
208 accactttaaaagttccagtggaattatcacaaccgaaatcgaagacaaaaatgccagaatcacaaaaacaaccaattttttgagatattttcctagtgg 307  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
39379518 accactttaaaagtttcagtggaattatcacaaccaaaatcgaagacaaaaatgccagaatcacaaaaacaaccaattttttgagatgttttcctagtgg 39379617  T
308 ctgggttccataaacggaaccagtactcataacatgaggctaaaccggaaccataagcgtaacgatcaccaactaaacagataaatccattacaggaacc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
39379618 ctgggttccataaacggaaccagtactcataacatgaggctaaaccggaaccataagcgtaacgatcaccaactaaacagaccaatccattacaggaacc 39379717  T
408 gactaaacgagaacaatctttttggctcaatagaaagtgaggatcagcaacaagggtaaacgaagggttatcgagtatacgaggtatagggtatggaatg 507  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39379718 gactaaacgagaacaatctttctggctcaatagaaagtgaggatcagcaacaagggtaaacgaagggttatcgagtatacgaggtatagggtatggaatg 39379817  T
508 atactcataaacattatcagggtattcagttatgagtgtgaagtgttgtggatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcg 607  Q
    |||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39379818 atact-gtaatcattatcagggtattcagttatgagtgtgaagtgttgtggatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcg 39379916  T
608 gaaatgagagttttccaaggattgcttacacatttgaatcgaagtagagattttacaggaagtaatgaaaggatcttggtgagaagatcgtcggagaaga 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |    
39379917 gaaatgagagttttccaaggattgcttacacatttgaatcgaagtagagattttacaggaagtaacgaaaggatctcggtgagaagatcgtcggagaaaa 39380016  T
708 acaccggcgacggagttgtagtcatcgctgattgttaacgatttccaatgccaatgcaccttcgccggagtgttatattgaaccgttgaaattgtgaaat 807  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||    
39380017 acagcggcgacggagttgtagtcatcgctgattgttaacgatttccaatgccaatgcaccttcgccggagtgatatattgaactgttgaaagtgtgaaat 39380116  T
808 gag 810  Q
    |||    
39380117 gag 39380119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 17561094 - 17561152
Alignment:
99 aagaggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaa 157  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||    
17561094 aagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaa 17561152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 4017084 - 4017133
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 164  Q
    ||||| ||||||||||||||||||| |||||||||| ||| |||| ||||    
4017084 aaactgtcaatatttctccaaacatcatcacccaaattgagaactttcac 4017133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 4366834 - 4366883
Alignment:
99 aagaggaacaaccgggaaactttcaatatttctccaaacattatcaccca 148  Q
    |||||||||||  || ||||||||||||| ||||||||| ||||||||||    
4366834 aagaggaacaataggaaaactttcaatatctctccaaacgttatcaccca 4366883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 4e-74; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 28 - 512
Target Start/End: Complemental strand, 3565537 - 3565059
Alignment:
28 tgaatagccaaccagttaagagtgccattaagaaacaaaccagtatgatgaaattgttcaatatcacaataaagaggaacaaccgggaaactttcaatat 127  Q
    |||| |||||||||||||||||||||||||||||||| | |||||||   ||||  || |  |||  ||  |||||||||| ||||||||||||||||||    
3565537 tgaacagccaaccagttaagagtgccattaagaaacacatcagtatgcccaaatccttgataatccaaacgaagaggaacagccgggaaactttcaatat 3565438  T
128 ttctccaaacattatcacccaaactgaaaactctcacatgggttgtcaattcttcgtcgacgccaaggtaacgtgacgcaaccactttaaaagttccagt 227  Q
    ||||||||||||||||||| ||||||||||||||||| | | || |||| |  || |       || |||||||||||||||||||||||||||||| ||    
3565437 ttctccaaacattatcacctaaactgaaaactctcacctcgcttttcaaatgatcatg------aatgtaacgtgacgcaaccactttaaaagttccggt 3565344  T
228 ggaattatcacaaccgaaatcgaagacaaaaatgccagaatcacaaaaacaaccaattttttgagatattttcctagtggctgggttccataaacggaac 327  Q
    |||||||||||||||  ||| |||||| ||| |   |  ||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |    
3565343 ggaattatcacaaccacaattgaagacgaaactatgaagatcacgaaaacaaccaatttttggagatattttcctagtagctgggttccataaacggagc 3565244  T
328 cagtactcataacatgaggctaaaccggaaccataagcgtaacgatcaccaactaaacagataaatccattacaggaaccgactaaacgagaacaatctt 427  Q
    |||||||||||||||   |    | | |||||||||  | |||||| ||||   |||||||| || ||||| ||| ||||  ||| || ||| || ||||    
3565243 cagtactcataacattcagtatcagcagaaccataaatgaaacgataaccagtcaaacagatcaacccattgcagaaaccagctataccagagcagtctt 3565144  T
428 tttggctcaatagaaagtgaggatcagcaacaagggtaaacgaagggttatcgagtatacgaggtatagggtatggaatgatact 512  Q
    |||   |||| | | ||||||||||||||||||  ||||| || ||||||||||||| |||||||||||| ||||||||||||||    
3565143 tttcattcaacatagagtgaggatcagcaacaaccgtaaatgacgggttatcgagtaaacgaggtataggatatggaatgatact 3565059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 30 - 511
Target Start/End: Complemental strand, 3557517 - 3557042
Alignment:
30 aatagccaaccagttaagagtgccattaagaaacaaaccagtatgatgaaattgttcaatatcacaataaagaggaacaaccgggaaactttcaatattt 129  Q
    ||||||||||||||||| |||||  |||||||||| | ||||||| | ||||  ||||  ||   ||| |||| | ||||| ||||||||||||||||||    
3557517 aatagccaaccagttaaaagtgctgttaagaaacacatcagtatgctcaaatccttcataatacaaattaagatggacaacagggaaactttcaatattt 3557418  T
130 ctccaaacattatcacccaaactgaaaactctcacatgggttgtcaattcttcgtcgacgccaaggtaacgtgacgcaaccactttaaaagttccagtgg 229  Q
    ||||||||||||||||| |||||||||||||| || |   |||||||    ||    |||  || ||||||||| |||||||||||||||||  | || |    
3557417 ctccaaacattatcacctaaactgaaaactctaacctcacttgtcaaacgatc----acg--aatgtaacgtgatgcaaccactttaaaagtgtcggtag 3557324  T
230 aattatcacaaccgaaatcgaagacaaaaatgccagaatcacaaaaacaaccaattttttgagatattttcctagtggctgggttccataaacggaacca 329  Q
    ||| ||||||||| |||| |||||| |||     |  ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||    
3557323 aatcatcacaaccaaaattgaagacgaaaccaggaagatcacgaaaacaaccaatttttggagatattttcctagtggctgggttccataaacgtagcca 3557224  T
330 gtactcataacatgaggctaaaccggaaccataagcgtaacgatcaccaactaaacagataaatccattacaggaaccgactaaacgagaacaatctttt 429  Q
    ||| |||||  ||    |   | |||| | ||||  | |||||| ||||   ||||| || || ||||| ||||||||  ||| || ||| || ||||||    
3557223 gtagtcatataattcatcatcatcggaccaataaatggaacgataaccagtcaaacaaatcaacccattgcaggaacctgctataccagagcagtctttt 3557124  T
430 tggctcaatagaaagtgaggatcagcaacaagggtaaacgaagggttatcgagtatacgaggtatagggtatggaatgatac 511  Q
    |   |||||||| || |||||||||  | ||||||||| || ||||||||||||| ||| ||||||||||||||||||||||    
3557123 tcattcaatagagagcgaggatcagtgataagggtaaaggacgggttatcgagtaaacggggtatagggtatggaatgatac 3557042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 535 - 743
Target Start/End: Complemental strand, 3564992 - 3564787
Alignment:
535 agttatgagtgtgaagtgttgtggatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgctt 634  Q
    |||||| |||||||||| |||   |||| |||||||| ||||| |||  || ||||| |||||||||||||||||||||||||| ||||||||||| |||    
3564992 agttattagtgtgaagtattg---attttgtgattttgatttcatgagatggaatttcacaaaattgggatcggaaatgagagtgttccaaggattactt 3564896  T
635 acacatttgaatcgaagtagagattttacaggaagtaatgaaaggatcttggtgagaagatcgtcggagaagaacaccggcgacggagttgtagtcatcg 734  Q
    ||||||||||| ||||| || ||||||||||||||||| || ||||||  || ||| ||||| |||||||||||| ||||||| |||   |||| ||| |    
3564895 acacatttgaaacgaagaagtgattttacaggaagtaacgagaggatcacggcgaggagatcatcggagaagaacgccggcgatggacgagtagacatgg 3564796  T
735 ctgattgtt 743  Q
    |||||||||    
3564795 ctgattgtt 3564787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 100 - 344
Target Start/End: Original strand, 1686634 - 1686872
Alignment:
100 agaggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcacatgggttgtcaattcttcgtcgacgccaaggtaac 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    |||||| |  ||    |||  |   ||||    
1686634 agaggaataaccgggaaactttcaatatttctccaaacattatcacctaaactgaaaactctcatataacatgtcaaataatc----acg--actttaac 1686727  T
200 gtgacgcaaccactttaaaagttccagtggaattatcacaaccgaaatcgaagacaaaaatgccagaatcacaaaaacaaccaattttttgagatatttt 299  Q
     ||||||||||||||||||||| |||||||||||||||||||| |||| |||||  |||  |     ||||| |||| | |||||| |||||||||||||    
1686728 atgacgcaaccactttaaaagtgccagtggaattatcacaaccaaaattgaagatgaaaccgtttacatcacgaaaagacccaattatttgagatatttt 1686827  T
300 cctagtggctgggttccataaacggaaccagtactcataacatga 344  Q
    ||||||||| ||||||||||||||||||| ||| || ||||||||    
1686828 cctagtggccgggttccataaacggaaccggtattcgtaacatga 1686872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 558 - 743
Target Start/End: Complemental strand, 3556954 - 3556769
Alignment:
558 gatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaagtagaga 657  Q
    ||||| |||||||| || ||||||  || ||||| |||||||||||||| ||||| ||||  |||||||  || ||||| ||| | ||||||||||||||    
3556954 gattttgtgattttgatctcttgagatggaatttcacaaaattgggatcagaaattagagcgttccaagacttacttacgcatctaaatcgaagtagaga 3556855  T
658 ttttacaggaagtaatgaaaggatcttggtgagaagatcgtcggagaagaacaccggcgacggagttgtagtcatcgctgattgtt 743  Q
    ||| |||| ||||||||||||||||| |  ||| ||||| |||||||||||||||||||||||| | |||| ||| ||||||||||    
3556854 tttcacagaaagtaatgaaaggatctcgacgaggagatcatcggagaagaacaccggcgacggaatcgtagacatggctgattgtt 3556769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 553 - 708
Target Start/End: Original strand, 3573456 - 3573610
Alignment:
553 ttgtggatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaagt 652  Q
    |||||||||| |||||||| |||||||||  |  ||||| |  ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||     
3573456 ttgtggattttgtgattttgatttcttgagatagaatttcatgaaattgggatcggaaatgagagtgttccaaggattacttacacatttgaaacgaaga 3573555  T
653 agagattttacaggaagtaatgaaaggatcttggtgagaagatcgtcggagaagaa 708  Q
    || ||||| ||||||||||||||||||| | | ||||| |||||||| ||||||||    
3573556 agtgatttcacaggaagtaatgaaaggaac-tagtgaggagatcgtcagagaagaa 3573610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 558 - 721
Target Start/End: Original strand, 1687154 - 1687317
Alignment:
558 gatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaagtagaga 657  Q
    ||||| |||||||| || ||||||  || ||||| ||||||  |||||| ||||| ||||  |||||||  || ||||| ||| |||||||||| |||||    
1687154 gattttgtgattttgatctcttgagatggaatttcacaaaaaagggatcagaaattagagcgttccaagacttacttacgcatctgaatcgaaggagaga 1687253  T
658 ttttacaggaagtaatgaaaggatcttggtgagaagatcgtcggagaagaacaccggcgacgga 721  Q
    ||| |||| ||||||||||||||||| |  ||| ||||| || |||||||||||||||||||||    
1687254 tttcacagaaagtaatgaaaggatctcgacgaggagatcatcagagaagaacaccggcgacgga 1687317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 434 - 512
Target Start/End: Original strand, 3573296 - 3573374
Alignment:
434 tcaatagaaagtgaggatcagcaacaagggtaaacgaagggttatcgagtatacgaggtatagggtatggaatgatact 512  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||||    
3573296 tcaatagagagtgagaatcagcgacaagggtaaacgaagggttatcaagtaaacgagatataggatatggaatgatact 3573374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 3561306 - 3561443
Alignment:
99 aagaggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcacatgggttgtcaattcttcgtcgacgccaaggtaa 198  Q
    |||||||||||  || |||||||||||||||||||||||||||||||| |||| |||| ||||||| | | | |||||||  ||    |||  || ||||    
3561306 aagaggaacaataggaaaactttcaatatttctccaaacattatcaccaaaaccgaaagctctcacctcgctagtcaattgatc----acg--aatgtaa 3561399  T
199 cgtgacgcaaccactttaaaagttccagtggaattatcacaacc 242  Q
    | |||||||||||||||| || | ||||| ||||||||||||||    
3561400 catgacgcaaccactttataaatgccagttgaattatcacaacc 3561443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 434 - 508
Target Start/End: Original strand, 1686950 - 1687024
Alignment:
434 tcaatagaaagtgaggatcagcaacaagggtaaacgaagggttatcgagtatacgaggtatagggtatggaatga 508  Q
    |||||||| |||||||||||||||||||||||| |||  |||||||||||| || || |||||| ||||||||||    
1686950 tcaatagagagtgaggatcagcaacaagggtaatcgacaggttatcgagtaaacaagatataggatatggaatga 1687024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 677
Target Start/End: Original strand, 3561795 - 3561915
Alignment:
557 ggatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaagtagag 656  Q
    |||||||||| | || ||||||||| ||| ||||| || ||    ||||| ||||||||||| ||||||   || ||||||||||||||||||| |||||    
3561795 ggatttcgtgttgttgatttcttgaggtgtaatttcacgaaggaaggatccgaaatgagagtgttccaatatttacttacacatttgaatcgaattagag 3561894  T
657 attttacaggaagtaatgaaa 677  Q
    ||||||  |||||||| ||||    
3561895 attttatgggaagtaacgaaa 3561915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 1686542 - 1686598
Alignment:
8 gagtgatcgggtcttcatcttgaatagccaaccagttaagagtgccattaagaaaca 64  Q
    ||||||| ||| | |||| ||||| ||||||||| ||||||||||||||||||||||    
1686542 gagtgattgggacgtcattttgaacagccaaccaattaagagtgccattaagaaaca 1686598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 3573134 - 3573206
Alignment:
263 cagaatcacaaaaacaaccaattttttgagatattttcctagtggctgggttccataaacggaaccagtactc 335  Q
    ||||||||| |||| | || |||||||||||||||||||  ||||| |||||||| || |||| |||||||||    
3573134 cagaatcacgaaaataccccattttttgagatattttccgggtggcagggttccagaatcggagccagtactc 3573206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 11849195 - 11849250
Alignment:
280 ccaattttttgagatattttcctagtggctgggttccataaacggaaccagtactc 335  Q
    |||| |||| ||||| || |||| |||||||||||||||||||||| |||||||||    
11849195 ccaaattttggagatgttgtcctggtggctgggttccataaacggagccagtactc 11849250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 3561512 - 3561545
Alignment:
299 tcctagtggctgggttccataaacggaaccagta 332  Q
    ||||||||||||||||||||||||||| ||||||    
3561512 tcctagtggctgggttccataaacggagccagta 3561545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 29899099 - 29899044
Alignment:
99 aagaggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactga 154  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||| |||||||    
29899099 aagaggaacaactgggaaactttcaatatctctccaaacattatcaccaaaactga 29899044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 29431340 - 29431398
Alignment:
99 aagaggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaa 157  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| |||||| ||||    
29431340 aagaggaacaacagggaaactttcaatatctctccaaacattatcactcaaacttaaaa 29431398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 29859173 - 29859109
Alignment:
102 aggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcacat 166  Q
    |||| ||||||||||||||||||||| ||||||||| |||||||||||||| | || ||||||||    
29859173 aggatcaaccgggaaactttcaatatctctccaaacgttatcacccaaacttagaattctcacat 29859109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 24391123 - 24391072
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaactctcacat 166  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||||||    
24391123 aaactttgaatatttctccaaatattatcacccaaactaaaaactctcacat 24391072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 29106539 - 29106484
Alignment:
99 aagaggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactga 154  Q
    ||||||| |||||||||||||||||| || |||||||||||||||||| |||||||    
29106539 aagaggatcaaccgggaaactttcaacatctctccaaacattatcaccaaaactga 29106484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 22021098 - 22021051
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaactctc 162  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||    
22021098 aaactttcaatatttctccaaacattatcgcccaaactaaatactctc 22021051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 9807549 - 9807511
Alignment:
120 ttcaatatttctccaaacattatcacccaaactgaaaac 158  Q
    |||||||| ||||||||||||||||||||||||||||||    
9807549 ttcaatatctctccaaacattatcacccaaactgaaaac 9807511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 29074777 - 29074731
Alignment:
108 aaccgggaaactttcaatatttctccaaacattatcacccaaactga 154  Q
    ||||||||||||||||| || |||||||||||||||||| |||||||    
29074777 aaccgggaaactttcaacatctctccaaacattatcaccaaaactga 29074731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 19637584 - 19637633
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 164  Q
    ||||||| ||||||||||||||| |||||||| ||||| |||||||||||    
19637584 aaactttgaatatttctccaaactttatcaccaaaactaaaaactctcac 19637633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 22036816 - 22036779
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaact 152  Q
    ||||||||||||||||||||||||||||| ||||||||    
22036816 aaactttcaatatttctccaaacattatcgcccaaact 22036779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 22473492 - 22473529
Alignment:
127 tttctccaaacattatcacccaaactgaaaactctcac 164  Q
    ||||||||||||||||||||||||||||| ||||||||    
22473492 tttctccaaacattatcacccaaactgaagactctcac 22473529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 29454445 - 29454490
Alignment:
99 aagaggaacaaccgggaaactttcaatatttctccaaacattatca 144  Q
    ||||||| |||| |||||||||||||||| ||||||||||||||||    
29454445 aagaggagcaacagggaaactttcaatatctctccaaacattatca 29454490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 29476676 - 29476740
Alignment:
102 aggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcacat 166  Q
    ||||||||| |||||||||| ||| | ||||||||||||||| || ||||||| || ||||||||    
29476676 aggaacaacggggaaactttgaatctctctccaaacattatctccaaaactgagaattctcacat 29476740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 19351386 - 19351449
Alignment:
101 gaggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 164  Q
    ||||||||| ||| ||||||  ||||| ||||||||||||||||| |||||| |||||| ||||    
19351386 gaggaacaatcggtaaacttggaatatctctccaaacattatcactcaaactaaaaactttcac 19351449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 29074608 - 29074553
Alignment:
280 ccaattttttgagatattttcctagtggctgggttccataaacggaaccagtactc 335  Q
    |||| |||| ||||| || |||| |||||||||||||||||||||| |||||||||    
29074608 ccaaattttggagatgttgtcctggtggctgggttccataaacggagccagtactc 29074553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 29106343 - 29106288
Alignment:
280 ccaattttttgagatattttcctagtggctgggttccataaacggaaccagtactc 335  Q
    |||| |||| ||||| || |||| |||||||||||||||||||||| |||||||||    
29106343 ccaaattttggagatgttgtcctggtggctgggttccataaacggagccagtactc 29106288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 29445989 - 29446036
Alignment:
99 aagaggaacaaccgggaaactttcaatatttctccaaacattatcacc 146  Q
    |||||||||||| |||||||||| ||| | ||||||||||||||||||    
29445989 aagaggaacaacggggaaactttgaatctgtctccaaacattatcacc 29446036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 20414618 - 20414576
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaa 157  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||    
20414618 aaacttttaatacttctccaaacattatcacccaaactaaaaa 20414576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 29858955 - 29858913
Alignment:
290 gagatattttcctagtggctgggttccataaacggaaccagta 332  Q
    ||||| || |||| |||||||||||||||||||||||||||||    
29858955 gagatgttgtccttgtggctgggttccataaacggaaccagta 29858913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 29880806 - 29880752
Alignment:
280 ccaattttttgagatattttcctagtggctgggttccataaacggaaccagtact 334  Q
    |||| ||| |||||||||||| |||||| |||||||||||||| ||| |||||||    
29880806 ccaaatttatgagatattttcttagtggatgggttccataaacagaagcagtact 29880752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 29884991 - 29884949
Alignment:
99 aagaggaacaaccgggaaactttcaatatttctccaaacatta 141  Q
    |||||||||||| || ||||||||||||| |||||||||||||    
29884991 aagaggaacaactggaaaactttcaatatctctccaaacatta 29884949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 12820674 - 12820715
Alignment:
291 agatattttcctagtggctgggttccataaacggaaccagta 332  Q
    ||||||||||||||||||||||||||| | | ||||||||||    
12820674 agatattttcctagtggctgggttccagatatggaaccagta 12820715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 18953272 - 18953321
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 164  Q
    ||||||| ||||| ||||||||||||||| || ||| |||||||||||||    
18953272 aaactttgaatatgtctccaaacattatcgccaaaattgaaaactctcac 18953321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 18983319 - 18983368
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 164  Q
    ||||||| ||||| ||||||||||||||| || ||| |||||||||||||    
18983319 aaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcac 18983368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 18997965 - 18998014
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 164  Q
    ||||||| ||||| ||||||||||||||| || ||| |||||||||||||    
18997965 aaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcac 18998014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 29880980 - 29880931
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 164  Q
    ||||||||||||||||||||||||| |||||| | | ||| |||||||||    
29880980 aaactttcaatatttctccaaacatcatcaccaagattgagaactctcac 29880931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 29898903 - 29898858
Alignment:
280 ccaattttttgagatattttcctagtggctgggttccataaacgga 325  Q
    |||| |||||||||| || |||| ||||||||||||||||||||||    
29898903 ccaaatttttgagatgttgtcctggtggctgggttccataaacgga 29898858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 3625469 - 3625418
Alignment:
113 ggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 164  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| ||||    
3625469 ggaaactttcaatatttctccaaacattatcaccaaaactgagaactttcac 3625418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 42297872 - 42297807
Alignment:
99 aagaggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 164  Q
    ||||||||| ||||| ||||||| |||| ||||||||||||||||  ||||||| || ||||||||    
42297872 aagaggaactaccggaaaactttgaatagttctccaaacattatcttccaaactaaagactctcac 42297807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 16723 - 16761
Alignment:
123 aatatttctccaaacattatcacccaaactgaaaactct 161  Q
    ||||||||||||||||||||| |||||| ||||||||||    
16723 aatatttctccaaacattatcgcccaaagtgaaaactct 16761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 6954856 - 6954906
Alignment:
109 accgggaaactttcaatatttctccaaacattatcacccaaactgaaaact 159  Q
    ||||||||||  ||||||| |||||||||||||||||||||| | ||||||    
6954856 accgggaaacaatcaatatctctccaaacattatcacccaaagtaaaaact 6954906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 33568705 - 33568660
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaactc 160  Q
    ||||||| |||||||||||||  | |||||||||||||||||||||    
33568705 aaactttgaatatttctccaacaactatcacccaaactgaaaactc 33568660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 20712884 - 20712922
Alignment:
123 aatatttctccaaacattatcacccaaactgaaaactct 161  Q
    ||||||||||||||||||||| |||||| ||||||||||    
20712884 aatatttctccaaacattatcgcccaaagtgaaaactct 20712922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 18921091 - 18921140
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 164  Q
    ||||||| |||||  |||||||||||||||| ||||||||||||| ||||    
18921091 aaactttgaatatccctccaaacattatcactcaaactgaaaactttcac 18921140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 5099 - 5054
Alignment:
115 aaactttcaatatttctccaaacattatcacccaaactgaaaactc 160  Q
    ||||||| |||||||||||||  | |||||||||||||||||||||    
5099 aaactttgaatatttctccaacaactatcacccaaactgaaaactc 5054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 3895 - 3830
Alignment:
99 aagaggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 164  Q
    ||||||||| ||||| ||||||  |||| |||||||||||||||   ||||||| |||||||||||    
3895 aagaggaactaccggaaaacttggaatagttctccaaacattattcgccaaactaaaaactctcac 3830  T

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Target: scaffold0128; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 8314 - 8269
Alignment:
118 ctttcaatatttctccaaacattatcacccaaactgaaaactctca 163  Q
    |||| ||||| |||||||||||||||||||||||| || |||||||    
8314 ctttgaatatatctccaaacattatcacccaaactaaagactctca 8269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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