View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4474-Insertion-2 (Length: 752)
Name: NF4474-Insertion-2
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4474-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 427
Target Start/End: Original strand, 56277359 - 56277787
Alignment:
| Q |
8 |
ggaacaacatcatttcaagccgttcattcatcaaagatcaactcaaaaacactaatcttgttttaaatgcttttattgttcaagataggtacatgttctg |
107 |
Q |
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| T |
56277359 |
ggaaccacatcatttcaagccgttcattcatcaaagatcaactcaaaaacacaaatcttgttttaaatggttttattgttcaagataggtacatgttctg |
56277458 |
T |
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| Q |
108 |
caaacacgatgttaaaaccattagttacattcctgtccaacccaaaaac---gctgctaaactagttgttcaccacaatgttttttcttttcttcctcaa |
204 |
Q |
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| T |
56277459 |
caaacacgatgttaaaaccattagttacattcctgtggaacccaaaaacaacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaa |
56277558 |
T |
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| Q |
205 |
gatgttgtgcttttgtcatcttgtaaaggaattctttgctgccgtacctgttttccttccccaaatccaaccatctatctctgtaatccttcaaacaaag |
304 |
Q |
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| T |
56277559 |
gatgttgttgttttggcttcctgtaaaggaattgtttgctgccgtacctgttttccttccccaaatccaaccatctatctctgcaatccttcaaacaaag |
56277658 |
T |
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| Q |
305 |
actggattcaattcaactgccctcctcaatgtcacattactgatagcatagctcttgc------------ttttgattttgacccttccaaattcaaatt |
392 |
Q |
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| T |
56277659 |
actttattcaattcaactgccctcctcaatgtgacataactgatagcatagctcttgcttttgattttgattttgattttgacccttc------caaatt |
56277752 |
T |
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| Q |
393 |
caaattggtaagggtgaaacgcattcagaagtatc |
427 |
Q |
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| T |
56277753 |
caaattggtaagggtgaaacgcattcagaagtatc |
56277787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 457 - 752
Target Start/End: Original strand, 56277805 - 56278099
Alignment:
| Q |
457 |
gatgaatcgttctacttcacatttgaagtgtactcctcagaaaccaaagcttggaagaaatccaatgagatatgcgactgtaattatgttttgattaaaa |
556 |
Q |
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| T |
56277805 |
gatgaatcgttctacttcacatttgaagtgtactcctcagaaaccaaagcttggaagaaatccaatgagacatgcgactgtaattatggtttgattaaaa |
56277904 |
T |
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| Q |
557 |
acaaagggttatacataggaggtgtcttgcattggcttacagaaggtgatcaagtcatcacctttaatcttgaaaaggaactgtctttgatgatttcagt |
656 |
Q |
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| T |
56277905 |
acaaagggttatacataggaggtgtcttgcattggcttacagaaggtgatcaaatcatcacctttaatgttgaaaaggaactgtctttgatgatttcagt |
56278004 |
T |
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| Q |
657 |
acctgttcctgcatgtgagtttaggaccgtccctcaagcttgcattgggagaatatgaaggaaggcttcattatgttcaggtatcagaacaaggtc |
752 |
Q |
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| T |
56278005 |
acctgttccggcatgtgagtttaggaccgtccctcaagcttgcatt-ggagaatatgaaggaaggcttcattatgttcaggtatcagaacaaggtc |
56278099 |
T |
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