View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4474-Insertion-3 (Length: 541)
Name: NF4474-Insertion-3
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4474-Insertion-3 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Original strand, 37792593 - 37793126
Alignment:
| Q |
8 |
cacactaccttgaagaagcgttttgtaaagaatatcaagtctaaacgtggaacgagaatagcaaaagattcaaattcaaataatcaccctacattggaag |
107 |
Q |
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| T |
37792593 |
cacactaccttgaagaagcgttttgtaaagaatatcaagtcgaaacgtggaacgagaatagcaaaagattcaaattcaaataatcaccctacattggaag |
37792692 |
T |
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| Q |
108 |
aacctaagaaatttgaaggagctttagagaacaacaatgatcctaatattgcaaatcaaatatctccacaaccatcttcaagcgaattgtcttgcataac |
207 |
Q |
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| T |
37792693 |
aacctaagaaatttgaagtagttttagagagcaacaatgatcctaatattgcaaatcaaatatctccgcaaccatcttcaagcgaattgtcttgcataac |
37792792 |
T |
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| Q |
208 |
aatggacaatgcaattcttgatgataatgacctttcttttatggaaacatacatggacaattttagtgagagtttctggacagagccatatatgatagac |
307 |
Q |
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| T |
37792793 |
aatggacaatgcaattcttgatgataatgacctttcttttatggaaacatacatggagaattttagtgagaatttctggacagagccatatatgatagac |
37792892 |
T |
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| Q |
308 |
aattcatatgtcccccataatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaacatcgatcccaatattacgagtccacaat |
407 |
Q |
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| T |
37792893 |
aattcatatgtcccccataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgagaacaatatcgatcccaatattacgagtccactat |
37792992 |
T |
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| Q |
408 |
cttcgcaaccattttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcacatgaaaattcagtttttgatggcagtgaacttcc |
507 |
Q |
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| T |
37792993 |
cttcacaaccattttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcacatgaaaattcagtttttgatggtagtgaacttcc |
37793092 |
T |
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| Q |
508 |
ggttatggatgcattcatagagactgtgagtgaa |
541 |
Q |
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| T |
37793093 |
gtttatggatgcattcatggagactgtgagtgaa |
37793126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 219 - 481
Target Start/End: Original strand, 37793272 - 37793534
Alignment:
| Q |
219 |
caattcttgatgataatgacctttcttttatggaaacatacatggacaattttagtgagagtttctggacagagccatatatgatagacaattcatatgt |
318 |
Q |
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| T |
37793272 |
caattcttgatgacaatgaccttcattttatggatgcatacatagagaatttgagtgagaatttctggtcagagccatatatgattgacagttcacattt |
37793371 |
T |
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| Q |
319 |
cccccataatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaacatcgatcccaatattacgagtccacaatcttcgcaacca |
418 |
Q |
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| T |
37793372 |
ccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaacca |
37793471 |
T |
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| Q |
419 |
ttttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcacatgaaaat |
481 |
Q |
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| T |
37793472 |
tcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaat |
37793534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 37793173 - 37793246
Alignment:
| Q |
87 |
ataatcaccctacattggaagaacctaagaaatttgaaggagctttagagaacaacaatgatcctaatattgca |
160 |
Q |
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| T |
37793173 |
ataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaacaataatcctaatactgca |
37793246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 37793133 - 37793229
Alignment:
| Q |
284 |
tggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaaca |
380 |
Q |
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| T |
37793133 |
tggacagagccatatatgatagacacttcctattccccatataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaaca |
37793229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 442
Target Start/End: Original strand, 37809272 - 37809388
Alignment:
| Q |
326 |
aatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaacatcgatcccaatattacgagtccacaatcttcgcaaccattttcaa |
425 |
Q |
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| T |
37809272 |
aatcaccctacaatggaaaaacccaagaaacttggagaaatgttagagaacaacagtgatttcaatattacgagtccaccatcttcacaaccatctacaa |
37809371 |
T |
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| Q |
426 |
gtggattctcttgcata |
442 |
Q |
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| T |
37809372 |
gtgcatcctcttgcata |
37809388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 37809233 - 37809331
Alignment:
| Q |
50 |
aaacgtggaacgagaatagcaaaagattcaaattcaaataatcaccctacattggaagaacctaagaaatttgaaggagctttagagaacaacaatgat |
148 |
Q |
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| T |
37809233 |
aaacgtggaacgaaaaaagccaaagactcaaattcaaaaaatcaccctacaatggaaaaacccaagaaacttggagaaatgttagagaacaacagtgat |
37809331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 37809493 - 37809533
Alignment:
| Q |
280 |
tttctggacagagccatatatgatagacaattcatatgtcc |
320 |
Q |
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| T |
37809493 |
tttctggacagagccatatataatagacagtttatatgtcc |
37809533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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