View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4474-Insertion-4 (Length: 462)

Name: NF4474-Insertion-4
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4474-Insertion-4
NF4474-Insertion-4
[»] chr4 (1 HSPs)
chr4 (10-462)||(42446897-42447349)


Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 10 - 462
Target Start/End: Complemental strand, 42447349 - 42446897
Alignment:
Q  10 ttcataataacttccgctaaaatcctgaattctttacttattcaccgtgtaaattacttgacgnnnnnnntaaacaggttaagttacactagtgtttcgg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  42447349 ttcataataacttccgctaaaatcctgaattctttacttattcaccgtgtaaattacttgacgaaaaaaataaacaggttaagttacactagtgtttcgg 42447250  T
Q  110 tatttgttgaagttctaagatatggaaatgacacgttctttgagtaaattctgattctgttccccgattcacatgctcttctacttctagtgttggtgta 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42447249 tatttgttgaagttctaagatatggaaatgacatgttctttgagtaaattctgattctgttccccgattcacatgctcttctacttctagtgttggtgta 42447150  T
Q  210 ctctaatcagtatctttacattttgctaaatctttattaacgaagatattgtaaattaaacttcagtgtttaaactttaaacatctttaaaattgatggt 309  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42447149 ctctaatcattatctttacattttgctaaatctttattaacgaagatattgtaaattaaacttcagtgtttaaactttaaacatctttaaaattgatggt 42447050  T
Q  310 ctaacaaatatattaaacagtcttgtatattgggctatctggaaagttgctgataatgatagagaccaaagtatcttgtatctatccatgcatatttctg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42447049 ctaacaaatatattaaacagtcttgtatattgggctatctggaaagttgctgataatgatagataccaaagtatcttgtatctatccatgcatatttctg 42446950  T
Q  410 gcgaggcataattatcatgagcattttaatcccaatgtaatttgtttttggag 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42446949 gcgaggcataattatcatgagcattttaatcccaatgtaatttgtttttggag 42446897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University