View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4474-Insertion-7 (Length: 313)
Name: NF4474-Insertion-7
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4474-Insertion-7 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 44 - 313
Target Start/End: Complemental strand, 12813448 - 12813177
Alignment:
| Q |
44 |
gatctaacttgattgttctgaggaattatgggaatttattt-tattaagtagac-agagacatgcatgattcaaagttaaaaacaacaatatatttcttt |
141 |
Q |
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| T |
12813448 |
gatctaagttgacagttctgaggaattaaaggaacctattaatattaagtagactagagacatgcatgataaaaagttaaaaacaacaatatatttcttt |
12813349 |
T |
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| Q |
142 |
caaaggaatatactaataagtgccaaacaaaggttaagaatagttaccccacattgcaataaataattgtagaaatatttgttacatataaatcatgtgc |
241 |
Q |
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| T |
12813348 |
caatggaatatgctaataagtgcaaaacaaaagttaagaatagttacacaacattgcaataaataattgtaggaatatttgttacatataaatcatgtgc |
12813249 |
T |
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| Q |
242 |
tgaaatctcgctcttgtaatatagttatgaatatgattttgttatcaataataccataaacttattcttgat |
313 |
Q |
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| T |
12813248 |
tgaaatctcgctcttgtaatatagttatgaatatgattttgttatcaataataccataaacttattcttgat |
12813177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 85 - 264
Target Start/End: Complemental strand, 12750442 - 12750262
Alignment:
| Q |
85 |
tattaagtagac-agagacatgcatgattcaaagttaaaaacaacaatatatttctttcaaaggaatatactaataagtgccaaacaaaggttaagaata |
183 |
Q |
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| T |
12750442 |
tattaagtagactagagacatgcatgataaaaagttaaaaacaacaatatatttctttcaatggaatatactaataagtgcaaaacaaaagttaagaata |
12750343 |
T |
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| Q |
184 |
gttaccccacattgcaataaataattgtagaaatatttgttacatataaatcatgtgctgaaatctcgctcttgtaatata |
264 |
Q |
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| T |
12750342 |
gttacacaacattgcaataaataattgtaggaatatttgttacatataaatcatgtgctgaaatctcgctcttgtaatata |
12750262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 12750114 - 12750064
Alignment:
| Q |
263 |
tagttatgaatatgattttgttatcaataataccataaacttattcttgat |
313 |
Q |
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| T |
12750114 |
tagttatgaatatgattttgttatcaataataccataaacttattcttgat |
12750064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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