View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4474_high_2 (Length: 377)

Name: NF4474_high_2
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4474_high_2
NF4474_high_2
[»] chr4 (4 HSPs)
chr4 (15-362)||(33815053-33815400)
chr4 (15-168)||(33810144-33810297)
chr4 (272-361)||(41905934-41906023)
chr4 (295-355)||(31310739-31310799)
[»] chr8 (1 HSPs)
chr8 (281-356)||(24566592-24566667)
[»] chr7 (1 HSPs)
chr7 (272-325)||(44533699-44533752)
[»] chr6 (2 HSPs)
chr6 (306-355)||(1375858-1375907)
chr6 (306-355)||(1383606-1383655)
[»] chr3 (1 HSPs)
chr3 (301-361)||(42619849-42619909)
[»] chr1 (1 HSPs)
chr1 (302-358)||(45682533-45682589)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 33815053 - 33815400
Alignment:
Q  15 atgaactaagcaatccatacaaggtgcctctggcaagtcatattgtgccctcagtttggaccgataataacatgaatataaacatgcaagtccagtcaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815053 atgaactaagcaatccatacaaggtgcctctggcaagtcatattgtgccctcagtttggaccgataataacatgaatataaacatgcaagtccagtcaca 33815152  T
Q  115 gccagtagcgccccataaattgttccatcacaggtgcaagctgcatataccaaaacatgataaataataatgattatagatatataagtactaatttgtt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33815153 gccagtagcgccccataaattgttccatcacaggtgcaagctgcatataccaaaacatgataaataataatgattatagatatataagtactgatttgtt 33815252  T
Q  215 taaattttatgcaaaattaaacctgtggtccttatctttaatgttttggtcttttagttttttctcacgtaattttggaccttttagtccgtttgcatat 314  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33815253 taaattttatgcaaaattaaacctgtggtccttaactttaatgttttggtcttttagttttttctcacgtaattttggaccttttagtacgtttgcatat 33815352  T
Q  315 gaattttcaagtttaaaatctcatgttcatatgcaaacatggataaag 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815353 gaattttcaagtttaaaatctcatgttcatatgcaaacatggataaag 33815400  T

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Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 33810144 - 33810297
Alignment:
Q  15 atgaactaagcaatccatacaaggtgcctctggcaagtcatattgtgccctcagtttggaccgataataacatgaatataaacatgcaagtccagtcaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33810144 atgaactaagcaatccatacaaggtgcctctggcaagtcatattgtgccctcagtttggaccgataataacatgaatataaacatgcaagtccagtcaca 33810243  T
Q  115 gccagtagcgccccataaattgttccatcacaggtgcaagctgcatataccaaa 168  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33810244 gccagtagcgccccataaattgttccatcacatgtgcaagctgcatataccaaa 33810297  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 41905934 - 41906023
Alignment:
Q  272 ttttttctcacgtaattttggaccttttagtccgtttgcatatgaattttcaagtttaaaatctcatgttcatatgcaaacatggataaa 361  Q
    |||||| |||||| ||||| | ||||||  ||| ||| |||||| ||||||||||||||||||| || | |||||||||| |||| ||||    
T  41905934 ttttttttcacgtcatttttgcccttttgatccattttcatatggattttcaagtttaaaatctaatatgcatatgcaaatatgggtaaa 41906023  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 31310799 - 31310739
Alignment:
Q  295 cttttagtccgtttgcatatgaattttcaagtttaaaatctcatgttcatatgcaaacatg 355  Q
    |||||||| |||| |||||||||||||||||| | |||||| |  |||||||| |||||||    
T  31310799 cttttagttcgttagcatatgaattttcaagtattaaatctaaaattcatatgaaaacatg 31310739  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 24566667 - 24566592
Alignment:
Q  281 acgtaattttggaccttttagtccgtttgcatatgaattttcaagtttaaaatctcatgttcatatgcaaacatgg 356  Q
    |||| ||||||| |||||| ||||||||||||||| || ||||||||| |||||| || ||||||| |||||||||    
T  24566667 acgtcattttggtccttttggtccgtttgcatatggatgttcaagtttcaaatctaatattcatatacaaacatgg 24566592  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 44533752 - 44533699
Alignment:
Q  272 ttttttctcacgtaattttggaccttttagtccgtttgcatatgaattttcaag 325  Q
    |||||| |||||| ||||| | |||||| ||||||||||||||| |||||||||    
T  44533752 ttttttttcacgttatttttgtccttttggtccgtttgcatatggattttcaag 44533699  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 1375858 - 1375907
Alignment:
Q  306 tttgcatatgaattttcaagtttaaaatctcatgttcatatgcaaacatg 355  Q
    |||||||||| |||||||||||| |||||| | ||||||| |||||||||    
T  1375858 tttgcatatgtattttcaagttttaaatctaaggttcataggcaaacatg 1375907  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 1383606 - 1383655
Alignment:
Q  306 tttgcatatgaattttcaagtttaaaatctcatgttcatatgcaaacatg 355  Q
    |||||||||| |||||||||||| |||||| | ||||||| |||||||||    
T  1383606 tttgcatatgtattttcaagttttaaatctaaggttcataggcaaacatg 1383655  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 42619849 - 42619909
Alignment:
Q  301 gtccgtttgcatatgaattttcaagtttaaaatctcatgttcatatgcaaacatggataaa 361  Q
    |||| |||||||||||||||||||| |  ||| || || ||||||||||||||| ||||||    
T  42619849 gtccatttgcatatgaattttcaagctccaaacctaatattcatatgcaaacatagataaa 42619909  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 45682533 - 45682589
Alignment:
Q  302 tccgtttgcatatgaattttcaagtttaaaatctcatgttcatatgcaaacatggat 358  Q
    |||||| ||||||||||||||||| || |||| | |  |||||||||||||||||||    
T  45682533 tccgttggcatatgaattttcaagctttaaatataagattcatatgcaaacatggat 45682589  T

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