View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4474_high_4 (Length: 318)

Name: NF4474_high_4
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4474_high_4
NF4474_high_4
[»] chr8 (1 HSPs)
chr8 (1-285)||(29023459-29023757)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 29023757 - 29023459
Alignment:
Q  1 agagccagaatcaatccctgatcagacatctagtataggtcatggttatattgttggtggtgacaaagatcgaatccattaatgttatgtttaattgaat 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29023757 agagccagaatcaatccctgatcagacatctactataggtcatggttctattgttggtggtgacaaagatcgaatccattaatgttatgtttaattgaat 29023658  T
Q  101 gttcaatattatttattattcagtaactatatggttacttttgttctgtataattgttta--------------atctgtgttatgttatgtgtattatt 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              || |||||||||||||||||||||||    
T  29023657 gttcaatattatttattattcagtaactatatggttacttttgttctgtataattgtttagtcttatatgtgttatatgtgttatgttatgtgtattatt 29023558  T
Q  187 gcatgcaattttcttttatttatgtttgttgtaattaaaaggaagcaatctacgtcacgttcttattgattctgaaactggaaatgaaatttggcaatt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29023557 gcatgcaattttcttttatttatgtttgttgtaattaaaaggaagcaatctatgtcacgttcttattgattctgaaactggaaatgaaatttggcaatt 29023459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University