View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4474_low_1 (Length: 732)
Name: NF4474_low_1
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4474_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 42003954 - 42003640
Alignment:
| Q |
19 |
aatacttcatttggctgataatcacaaagacatatagagcaagtgttgtcacttggcctaggcaatcgtccactttcaccaagctgggttttagggtatc |
118 |
Q |
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| T |
42003954 |
aatacttcatttggctgatactcacaaagacatatagagcaagtgttgtcactaggcctaggcaatcgtccactttcaccaagctgggttttagggtatc |
42003855 |
T |
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| Q |
119 |
tttcgattgttgccccgtcgaggcccataacgaaaatcgggggatgcgtcataataaaggttgaaaattcagtgcttgtttgacgttgtacttgattcct |
218 |
Q |
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| T |
42003854 |
tttcgattgttgccccgtcgaggcccataacgaaaatcggggggtgcgtcataataaaggttgaaaattcagtgcttgtttgacgttgtacttgattcct |
42003755 |
T |
|
| Q |
219 |
tgtgtacttctttttgcataacatccatgtaagcataattagacctaggagtccaggtattcccaaacctaggcttaaaccatacttgactttcctcgaa |
318 |
Q |
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| T |
42003754 |
tgtgtacttgtttttgcataacatcaatgtaagcataattagacctaggagtccaggtattcccaaacctaggcttaaaccatacttgactttccttgaa |
42003655 |
T |
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| Q |
319 |
agacctacataaata |
333 |
Q |
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| T |
42003654 |
agacctacataaata |
42003640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 504 - 726
Target Start/End: Complemental strand, 42003576 - 42003354
Alignment:
| Q |
504 |
catcattgactatttctgaccttgggtgggaagatcataacaagcaagacgaagagcatcatccccaaccaatccacatcttcctccacgtgcttcacag |
603 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42003576 |
catcattgactatttctcaccttgggtgggaagatcataacaagcaagacgaagagcatcatccccaaccaatccacatcttcctccacgtgcttcacaa |
42003477 |
T |
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| Q |
604 |
tttccacaaccaggatcatcccactgcaagggtatgttagaataataatcagtccaaaacaaccaattcgcctcttccaccggtatcaaagctgacgaaa |
703 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |
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| T |
42003476 |
tttccacaatcaggatcatcccactgcaagggtatgttagaataataatcagtccaaaacaaccaattcgtctcttccacaggtatcaaagttgacgaaa |
42003377 |
T |
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| Q |
704 |
taaattcacatgatgatgtccat |
726 |
Q |
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||||||||||| ||||||||||| |
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| T |
42003376 |
taaattcacataatgatgtccat |
42003354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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