View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4474_low_11 (Length: 240)
Name: NF4474_low_11
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4474_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 53493204 - 53493424
Alignment:
| Q |
20 |
ctggattcaacaagttatgagaggctcaagtgggttcagaagaattacatgatctataattactgcagtgataacaaaagatttcctcagggtcttcctc |
119 |
Q |
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| T |
53493204 |
ctggattcaacaagttatgagaggctcaagtgggttcagaagaattacatgatctataattactgcagtgataacaaaagatttcctcagggtcttcctc |
53493303 |
T |
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| Q |
120 |
aagaatgcaggatgacttaggggatttgtgaatttagtttacatcaacatgttgtataattgtattgtattttcttttgtttttgtaactttcataatca |
219 |
Q |
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| T |
53493304 |
aagaatgcaggatgacttaggggatttgtgaatttagtttacatcaacatgttgtataattgtattgtattttcttttgtttttgtaactttcataatca |
53493403 |
T |
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| Q |
220 |
aactcattaattatttgtacc |
240 |
Q |
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| T |
53493404 |
aactcattaattatttgtacc |
53493424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 53495580 - 53495633
Alignment:
| Q |
52 |
ggttcagaagaattacatgatctataattactgcagtgataacaaaagatttcc |
105 |
Q |
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| T |
53495580 |
ggttcagaagaattacatgatttacaattattgcactgacatcaaaagatttcc |
53495633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 37189131 - 37189243
Alignment:
| Q |
21 |
tggattcaacaagttatgagaggctcaagtgggttcagaagaattacatgatctataattactgcagtgataacaaaagatttcctcagggtcttcctca |
120 |
Q |
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| T |
37189131 |
tggattctacaagtcatgagaggctcaagtgggtgcagaagaattatatgatctacaactactgcactgataccaaaagatttcctcagggtcttcctca |
37189230 |
T |
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| Q |
121 |
agaatgcaggatg |
133 |
Q |
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| T |
37189231 |
agaatgcatgatg |
37189243 |
T |
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