View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4474_low_3 (Length: 421)
Name: NF4474_low_3
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4474_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 52471810 - 52471642
Alignment:
| Q |
19 |
aaaggttgataagaagacaaaaccactaggctgtggacaggagtggtggttatttaatagagagtatagagacaaagaaaataatatactctggcttgaa |
118 |
Q |
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| T |
52471810 |
aaaggttgataagaagacaaaaccactagtctgtggactggagtggtggttatttaatagagagtatagagacaaagaaaataatatactctggcttgaa |
52471711 |
T |
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| Q |
119 |
agtgaactaaaatgggaggagggaaatgattgtttttggattagtttaatttaagttcactttttccac |
187 |
Q |
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| T |
52471710 |
agtgaactaaaatgggaggagggaaataattgtgtttggattagtttaatttaagttcactttttccac |
52471642 |
T |
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Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 263 - 406
Target Start/End: Complemental strand, 52471584 - 52471441
Alignment:
| Q |
263 |
attggatgagagccaggggacaaaggttctacttcatctgaaattttaaaataaatgaaaatgaaaaacataacttgtaatacaagaaagcccgtcagct |
362 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52471584 |
attggatgagagccaggtgacaaagtttctacttcatctgaaattttaaaataaatgaatatgaaaaacataacttgtaatacaagaaagcccgtcagct |
52471485 |
T |
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| Q |
363 |
atattctttaaataaattctttgaaaacaaaagtattagttcat |
406 |
Q |
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| T |
52471484 |
atattctttaaataaattctttgaaaacaaaagtattagttcat |
52471441 |
T |
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