View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4474_low_5 (Length: 322)

Name: NF4474_low_5
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4474_low_5
NF4474_low_5
[»] chr4 (6 HSPs)
chr4 (15-297)||(6830449-6830731)
chr4 (26-75)||(25201193-25201242)
chr4 (23-75)||(1843017-1843069)
chr4 (25-64)||(52459215-52459254)
chr4 (25-64)||(52460472-52460511)
chr4 (23-51)||(3665317-3665345)
[»] scaffold0552 (1 HSPs)
scaffold0552 (15-297)||(9950-10232)
[»] chr1 (3 HSPs)
chr1 (25-76)||(5509709-5509760)
chr1 (20-76)||(24185519-24185575)
chr1 (25-54)||(44310586-44310615)
[»] chr3 (6 HSPs)
chr3 (23-93)||(10992913-10992982)
chr3 (23-76)||(29713999-29714052)
chr3 (23-103)||(30190997-30191076)
chr3 (25-62)||(3917992-3918029)
chr3 (23-103)||(11830318-11830397)
chr3 (35-77)||(46947640-46947682)
[»] chr8 (4 HSPs)
chr8 (23-108)||(10697529-10697614)
chr8 (23-76)||(11648608-11648661)
chr8 (25-103)||(24682824-24682902)
chr8 (23-76)||(9137727-9137780)
[»] chr5 (3 HSPs)
chr5 (23-75)||(8806174-8806226)
chr5 (23-76)||(23151603-23151656)
chr5 (23-76)||(3654868-3654921)
[»] chr2 (4 HSPs)
chr2 (25-77)||(38422791-38422843)
chr2 (23-77)||(43673131-43673185)
chr2 (23-76)||(19091038-19091091)
chr2 (23-93)||(13597713-13597782)
[»] scaffold0137 (1 HSPs)
scaffold0137 (25-62)||(21302-21339)
[»] chr7 (4 HSPs)
chr7 (25-76)||(9420654-9420705)
chr7 (20-58)||(45445941-45445979)
chr7 (25-57)||(39038797-39038829)
chr7 (23-75)||(40934245-40934297)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 6830731 - 6830449
Alignment:
Q  15 atgaatgtaaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaacatgatctgaaacgcattcaagatcatgcagccccacca 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6830731 atgagtgtaaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaacatgatctgaaacgcattcaagatcatgcagccccacca 6830632  T
Q  115 attttttgtaatgttattcttttgtagtaataatatatatgatgatgacttggggtgccaacatagttgtgacttgtgatttcaaaacatcgtgttgtgg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6830631 attttttgtaatgttattcttttgtagtaataatatatatgatgatgacttggggtgccaacatagttgtgacttgtgatttcaaaacatcgtgttgtgg 6830532  T
Q  215 tgacttggagtgtcaacgaaactgatttatgaattggcatagttaattcatttatagttcatttaaataagagaaatgctagg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6830531 tgacttggagtgtcaacgaaactgatttatgaattggcatagttaattcatttatagttcatttaaataagagaaatgctagg 6830449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 25201193 - 25201242
Alignment:
Q  26 attgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaa 75  Q
    |||||||||||||||||| |||||||||||||||||| | ||||||||||    
T  25201193 attgaatttgataatgcatgatcatgtgagacgcattcatgatcatgaaa 25201242  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 1843069 - 1843017
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaa 75  Q
    |||||||||| ||||| |||||||||||| |||||||||| | ||||||||||    
T  1843069 aaaattgaatatgatattgcaagatcatgcgagacgcattcaagatcatgaaa 1843017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 52459215 - 52459254
Alignment:
Q  25 aattgaatttgataatgcaagatcatgtgagacgcattta 64  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  52459215 aattgaatttgataatgcaagatcatgtgaaacacattta 52459254  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 52460472 - 52460511
Alignment:
Q  25 aattgaatttgataatgcaagatcatgtgagacgcattta 64  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  52460472 aattgaatttgataatgcaagatcatgtgaaacacattta 52460511  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 3665345 - 3665317
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatg 51  Q
    |||||||||||||||||||||||||||||    
T  3665345 aaaattgaatttgataatgcaagatcatg 3665317  T

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Target: scaffold0552 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 10232 - 9950
Alignment:
Q  15 atgaatgtaaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaacatgatctgaaacgcattcaagatcatgcagccccacca 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10232 atgagtgtaaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcataaaacatgatctgaaacgcattcaagatcatgcagccccacca 10133  T
Q  115 attttttgtaatgttattcttttgtagtaataatatatatgatgatgacttggggtgccaacatagttgtgacttgtgatttcaaaacatcgtgttgtgg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10132 attttttgtaatgttattcttttgtagtaataatatatatgatgatgacttggggtgccaacatagttgtgacttgtgatttcaaaacatcgtgttgtgg 10033  T
Q  215 tgacttggagtgtcaacgaaactgatttatgaattggcatagttaattcatttatagttcatttaaataagagaaatgctagg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032 tgacttggagtgtcaacgaaactgatttatgaattggcatagttaattcatttatagttcatttaaataagagaaatgctagg 9950  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 5509760 - 5509709
Alignment:
Q  25 aattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaac 76  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  5509760 aattgaatttgataatgcaagatcatgtgagacgcattcataatcatgaaac 5509709  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 24185575 - 24185519
Alignment:
Q  20 tgtaaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaac 76  Q
    ||||||||||||||||||||| ||| ||||||| | ||||||| | |||||||||||    
T  24185575 tgtaaaattgaatttgataatacaaaatcatgtaaaacgcattcatgatcatgaaac 24185519  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 44310586 - 44310615
Alignment:
Q  25 aattgaatttgataatgcaagatcatgtga 54  Q
    ||||||||||||||||||||||||||||||    
T  44310586 aattgaatttgataatgcaagatcatgtga 44310615  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 10992982 - 10992913
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaacatgatctgaaacgcatt 93  Q
    |||||||||||||||| |||||||||||| |||||||||| | |||||||||||  ||| |||||||||||    
T  10992982 aaaattgaatttgatattgcaagatcatgcgagacgcattcaagatcatgaaac-cgatgtgaaacgcatt 10992913  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 29713999 - 29714052
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaac 76  Q
    |||||||||||| ||| ||||||||||||||||||||||| | |||||||||||    
T  29713999 aaaattgaatttaatattgcaagatcatgtgagacgcattcatgatcatgaaac 29714052  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 30191076 - 30190997
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaacatgatctgaaacgcattcaagatcatg 103  Q
    |||||||||||||||||||| | |||||| |||||||||| | ||||||||||| |||| ||| ||||||| | |||||||    
T  30191076 aaaattgaatttgataatgctaaatcatgcgagacgcattcatgatcatgaaac-tgatgtgagacgcatttaggatcatg 30190997  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 3918029 - 3917992
Alignment:
Q  25 aattgaatttgataatgcaagatcatgtgagacgcatt 62  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  3918029 aattgaatttgataatgcaagatcatgcgagacgcatt 3917992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 11830397 - 11830318
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaacatgatctgaaacgcattcaagatcatg 103  Q
    |||||||||||||||||||| | ||| |||||||| |||| | ||||||||||| |||| ||| ||||||| | |||||||    
T  11830397 aaaattgaatttgataatgctaaatcttgtgagacacattcatgatcatgaaac-tgatgtgagacgcatttaggatcatg 11830318  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 46947640 - 46947682
Alignment:
Q  35 gataatgcaagatcatgtgagacgcatttaggatcatgaaaca 77  Q
    |||||||||||||||||||||||||||| | ||||| ||||||    
T  46947640 gataatgcaagatcatgtgagacgcattcatgatcaagaaaca 46947682  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 10697529 - 10697614
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaacatgatctgaaacgcattcaagatcatgcagcc 108  Q
    |||||| ||||||||||||||| |||| |||||| |  ||   |||||||||||||||| |||||||||||||  |||||||||||    
T  10697529 aaaatttaatttgataatgcaaaatcacgtgagatgtgttcgagatcatgaaacatgatgtgaaacgcattcataatcatgcagcc 10697614  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 11648661 - 11648608
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaac 76  Q
    |||||||||||||||||||||| |||||| ||||| |||| | |||||||||||    
T  11648661 aaaattgaatttgataatgcaaaatcatgcgagacacattcatgatcatgaaac 11648608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 24682824 - 24682902
Alignment:
Q  25 aattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaacatgatctgaaacgcattcaagatcatg 103  Q
    ||||||||||||||||||||||| |||  |||| |||| | |||||||||||| ||| ||| | ||||| | |||||||    
T  24682824 aattgaatttgataatgcaagatgatgcaagacacattcatgatcatgaaacacgatgtgacatgcatttaggatcatg 24682902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 9137727 - 9137780
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaac 76  Q
    |||||||||||| ||| || ||||||||| |||||||||| | |||||||||||    
T  9137727 aaaattgaatttaatattgtaagatcatgcgagacgcattcatgatcatgaaac 9137780  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 8806226 - 8806174
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaa 75  Q
    |||||||||||||||||| ||| ||||||||||||||||| | ||||||||||    
T  8806226 aaaattgaatttgataatacaaaatcatgtgagacgcattcatgatcatgaaa 8806174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 23151603 - 23151656
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaac 76  Q
    |||||||||||||||| |||||||||||| |||| ||||| | |||||||||||    
T  23151603 aaaattgaatttgatattgcaagatcatgcgagatgcattcatgatcatgaaac 23151656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 3654868 - 3654921
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaac 76  Q
    |||||| ||||||| ||||||| ||||||  ||||||||||| |||||||||||    
T  3654868 aaaattaaatttgagaatgcaaaatcatgcaagacgcatttatgatcatgaaac 3654921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 38422843 - 38422791
Alignment:
Q  25 aattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaaca 77  Q
    ||||||||||||||||||||||||||||||||| |||| | |||| |||||||    
T  38422843 aattgaatttgataatgcaagatcatgtgagacacattcatgatcgtgaaaca 38422791  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 43673185 - 43673131
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaaca 77  Q
    |||||||||||||||||||||||||||||| |||| ||||   ||||||||||||    
T  43673185 aaaattgaatttgataatgcaagatcatgtaagacacattcttgatcatgaaaca 43673131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 19091091 - 19091038
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaac 76  Q
    ||||||||||||||||||||||||||||| ||| |||||| | | |||||||||    
T  19091091 aaaattgaatttgataatgcaagatcatgcgagtcgcattcacgttcatgaaac 19091038  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 13597782 - 13597713
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaacatgatctgaaacgcatt 93  Q
    |||||| ||||||||||||||| |||||| ||||| |||| | ||||||||||| |||| ||| |||||||    
T  13597782 aaaattaaatttgataatgcaaaatcatgcgagacacattcatgatcatgaaac-tgatgtgagacgcatt 13597713  T

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Target: scaffold0137 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 21339 - 21302
Alignment:
Q  25 aattgaatttgataatgcaagatcatgtgagacgcatt 62  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  21339 aattgaatttgataatgcaagatcatgcgagacgcatt 21302  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 9420654 - 9420705
Alignment:
Q  25 aattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaac 76  Q
    |||||||||| |||||||||||||||| |||| ||||| | |||||||||||    
T  9420654 aattgaatttaataatgcaagatcatgcgagaggcattcatgatcatgaaac 9420705  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 45445979 - 45445941
Alignment:
Q  20 tgtaaaattgaatttgataatgcaagatcatgtgagacg 58  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  45445979 tgtagaattgaatttgataatgcaagatcatgcgagacg 45445941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 39038829 - 39038797
Alignment:
Q  25 aattgaatttgataatgcaagatcatgtgagac 57  Q
    ||||||||||||||||||||||||||| |||||    
T  39038829 aattgaatttgataatgcaagatcatgcgagac 39038797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 40934245 - 40934297
Alignment:
Q  23 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatgaaa 75  Q
    ||||||| |||||||||||||| || ||| |||| ||||||| ||||||||||    
T  40934245 aaaattggatttgataatgcaaaattatgcgagatgcatttatgatcatgaaa 40934297  T

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