View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4474_low_8 (Length: 251)
Name: NF4474_low_8
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4474_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 30505409 - 30505180
Alignment:
| Q |
1 |
tatcataatatgaatttagaagtaaatgtaatagacttgtgtagttagcttcttcatttgtaacagacgtgttttttgtgatttgtaagggactaaagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30505409 |
tatcataatatgaatttagaagtaaatgtaatagacttgtgtagttagcttcttcatttgtaacagacgtgttttttgtgatttgtgagggactaaagtg |
30505310 |
T |
|
| Q |
101 |
tgttttttctcatttaagagattattcaatcatctcttaaattaaagcgtgagggactaaattcatgattcaatcataaattttagttcatggattaaca |
200 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30505309 |
tgttttttctcatttaagagattattcaaccatctcttaaattaaagcgtgagggactaaattcatgattcaatcataaattttagttcatggattaaca |
30505210 |
T |
|
| Q |
201 |
tgaattttattttggcttaattgcattttt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
30505209 |
tgaattttattttggcttaattgcattttt |
30505180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 42436814 - 42436856
Alignment:
| Q |
199 |
catgaattttattttggcttaattgcatttttggccccctatg |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
42436814 |
catgaattttcttttggcttaattgcatttttggccccctatg |
42436856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 16879225 - 16879261
Alignment:
| Q |
204 |
attttattttggcttaattgcatttttggccccctat |
240 |
Q |
| |
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|
| T |
16879225 |
attttatttaggcttaattgcatttttggacccctat |
16879261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 29776942 - 29776906
Alignment:
| Q |
205 |
ttttattttggcttaattgcatttttggccccctatg |
241 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
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|
| T |
29776942 |
ttttattttggcttaattgcacttttggccccctatg |
29776906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 3556231 - 3556201
Alignment:
| Q |
210 |
ttttggcttaattgcatttttggccccctat |
240 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
3556231 |
ttttggcttaattgcatttttggccccctat |
3556201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 11363878 - 11363909
Alignment:
| Q |
210 |
ttttggcttaattgcatttttggccccctatg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
11363878 |
ttttggcttaattgcatttttggccccctatg |
11363909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 20480071 - 20480103
Alignment:
| Q |
208 |
tattttggcttaattgcatttttggccccctat |
240 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
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|
| T |
20480071 |
tattttggcttaattgcacttttggccccctat |
20480103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 9878356 - 9878385
Alignment:
| Q |
211 |
tttggcttaattgcatttttggccccctat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
9878356 |
tttggcttaattgcatttttggccccctat |
9878385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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