View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4474_low_9 (Length: 245)
Name: NF4474_low_9
Description: NF4474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4474_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 53425081 - 53424859
Alignment:
| Q |
18 |
atgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtacaatc |
117 |
Q |
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| T |
53425081 |
atgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtacaatc |
53424982 |
T |
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| Q |
118 |
tatagcgctctgcggtatatcaannnnnnnnnnnnnnnnnnnnnnnnncaatgatatatttctcatgtttgataattgttattgttaagggtcaagccat |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424981 |
tatagcgctctgcggtatatcaatttattttttaatttttttaattttcaatgatatatttctcatgtttgataattgttattgttaagggtcaagccat |
53424882 |
T |
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| Q |
218 |
aaatttcacccctctttcaaaat |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
53424881 |
aaatttcacccctctttcaaaat |
53424859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 48372462 - 48372558
Alignment:
| Q |
18 |
atgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtaca |
114 |
Q |
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| T |
48372462 |
atgatgcaccttggatattaacggttgctgccaccactattgaccgtgactttcagtccaatgttgtcttgggtaataacaaagttgtcaaggtaca |
48372558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 26097598 - 26097502
Alignment:
| Q |
18 |
atgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtaca |
114 |
Q |
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| T |
26097598 |
atgacgctccttggatactaacggttgctgccactaccattgatcgtgactttcagtccaatgttgtcttgggtaataacaaagttgtcaaggtaca |
26097502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 53309071 - 53308963
Alignment:
| Q |
18 |
atgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtacaatc |
117 |
Q |
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|||| ||||||||||| || ||||||| |||||| || |||||| ||||| | |||||||| ||||||| |||||| ||||||||| ||||||||| |
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| T |
53309071 |
atgacgctccttggatattaactgttgtagccactaccatcgattgtgatatgcagtccaacgttgttttaggtagtggcaaagttattgaggtacaatt |
53308972 |
T |
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| Q |
118 |
tatagcgct |
126 |
Q |
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|||| |||| |
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| T |
53308971 |
tataacgct |
53308963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 53432222 - 53432124
Alignment:
| Q |
18 |
atgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtacaat |
116 |
Q |
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|||||||||||||||| || || |||| ||||| ||||| || ||||| |||||||||| |||| ||||||| ||| |||||||||||||||||| |
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| T |
53432222 |
atgatgctccttggatattaaccgttggtgccacaactattgaccgtgaatttcagtccaacgttgtcttgggtaataaagaagttatcaaggtacaat |
53432124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 48373647 - 48373682
Alignment:
| Q |
205 |
agggtcaagccataaatttcacccctctttcaaaat |
240 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
48373647 |
agggtcaagccataaatttctcccctctttcaaaat |
48373682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 53320847 - 53320744
Alignment:
| Q |
18 |
atgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtacaatc |
117 |
Q |
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|||||||||| ||||| || || |||| |||||| || || || |||||||| ||||| ||| |||| ||||||| | |||||| |||||||||||| | |
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| T |
53320847 |
atgatgctccctggatattaaccgttggagccacaacaattgaccgtgatctccagtctaatgttgtcttgggtaatggcaaagtgatcaaggtacaaac |
53320748 |
T |
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| Q |
118 |
tata |
121 |
Q |
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|||| |
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|
| T |
53320747 |
tata |
53320744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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