View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4475-Insertion-11 (Length: 298)
Name: NF4475-Insertion-11
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475-Insertion-11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 47731158 - 47731415
Alignment:
| Q |
6 |
caagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaagaac-tgacccattcatagaaatgtagctcattctgcatatgatgag |
104 |
Q |
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| T |
47731158 |
caagggactctatgaaacgaagagaacaccaagggcatgaccagaaagaggaagaacctgacccgttcatagaaatgtagcccattctgcatatgatgag |
47731257 |
T |
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| Q |
105 |
acttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctat |
204 |
Q |
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| T |
47731258 |
acttttcttcattgtgtgtgtgtgattgaacccattctaagcacttgtggcagcaagcaggatttaatcaatctgattttttctctaacgacgacactat |
47731357 |
T |
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| Q |
205 |
aaattggatcaagaagagggtgatggggccttactatttcctttttgcagcaacaatt |
262 |
Q |
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| T |
47731358 |
aaattggatcaagaacagggtgatggggccttactatttcctttttgcagcaacaatt |
47731415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 258
Target Start/End: Complemental strand, 50823520 - 50823362
Alignment:
| Q |
97 |
atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac |
196 |
Q |
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| T |
50823520 |
atgatgagacttttcttcatt--gtgtgcgtgattgcacccattctaagcacttgtggcagcaagcaggttttaatcaatctgattttttctctaatgag |
50823423 |
T |
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| Q |
197 |
gacgctataaattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac |
258 |
Q |
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| T |
50823422 |
gatgctataaattggatcaagaatggagtgat-gacccttaccctttcctttttgcagcaac |
50823362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 106 - 258
Target Start/End: Complemental strand, 26334526 - 26334376
Alignment:
| Q |
106 |
cttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctata |
205 |
Q |
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| T |
26334526 |
cttttcttca--ttatgtgtgtgattgcacccattctaaacacttgtggtagtaggccatatttaatcaatatgaccttttctccaatgaagacgctata |
26334429 |
T |
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| Q |
206 |
aattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac |
258 |
Q |
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| T |
26334428 |
aattggatcaagaatagggtgatgggccctcactctttcctttttgcagcaac |
26334376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 47731491 - 47731529
Alignment:
| Q |
260 |
attcaaggtatgattgataccctcaaagcttcttatcct |
298 |
Q |
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| T |
47731491 |
attcaaggtatggttgataccctcaaagcttcttatcct |
47731529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 24873567 - 24873730
Alignment:
| Q |
97 |
atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac |
196 |
Q |
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| T |
24873567 |
atgatgagacttttcttcatt--gcgtgcgtgatagcacccattctaaacatttgcggcaacatgtcgaatttaatcaagctgattttt-ctccaattaa |
24873663 |
T |
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| Q |
197 |
gacgctataaattggatcaagaa-gagggtgatggggccttactatttcctttttgcagcaacaatt |
262 |
Q |
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| T |
24873664 |
gatgctataaattggaccaaggatgggggtgatgggcccttactctttcctttttgcagcaacaatt |
24873730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 24873186 - 24873130
Alignment:
| Q |
6 |
caagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaagaac |
62 |
Q |
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| T |
24873186 |
caagggaccctatgaaaccaagagaactccaagggcaagaccaaaaagaggaagaac |
24873130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 43709297 - 43709260
Alignment:
| Q |
225 |
tgatggggccttactatttcctttttgcagcaacaatt |
262 |
Q |
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| T |
43709297 |
tgatgggcccttactatttcctttttgcagcaacaatt |
43709260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 27154928 - 27154966
Alignment:
| Q |
260 |
attcaaggtatgattgataccctcaaagcttcttatcct |
298 |
Q |
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| T |
27154928 |
attcaaggtatggttgacaccctcaaagcttcttatcct |
27154966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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