View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4475-Insertion-14 (Length: 156)
Name: NF4475-Insertion-14
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475-Insertion-14 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 1e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 4268342 - 4268194
Alignment:
| Q |
8 |
aatagcccatagttttaagccattcttgttgttttacttggtgtctttactaataacagatattaacatcttctttgaattttgatgccttggatcaaat |
107 |
Q |
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| T |
4268342 |
aatagcccatagttttaagccattcttgttgttttatttggtgtctttactaataacagatattaacatcttctttgaattttgatgccttggatcaaat |
4268243 |
T |
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| Q |
108 |
gacaaacaagaatagaataagattactgcttattcttttctatttggta |
156 |
Q |
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| T |
4268242 |
gacaaacaagaatagaataagattactgcttattcttttctatttggta |
4268194 |
T |
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Target: chr6; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 4037788 - 4037851
Alignment:
| Q |
8 |
aatagcccatag-ttttaagccattcttgttgttttacttggtgtctttactaataacagatat |
70 |
Q |
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| T |
4037788 |
aatagcccataggttttaggccattcttgttgttttacttgttgtctttaccaataacagatat |
4037851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 4261509 - 4261381
Alignment:
| Q |
8 |
aatagcccatagttttaagccattcttgttgt-tttacttggt-gtctttactaataacagatattaac-atcttctttgaat----tttgatgccttgg |
100 |
Q |
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| T |
4261509 |
aatagcccataggtttaggccattcttgttgtctttacttagttgtttttactaataacagatataaagtattgtcttaacatcttttttgatgccttgg |
4261410 |
T |
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| Q |
101 |
atcaaatgacaaacaagaatagaataaga |
129 |
Q |
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| T |
4261409 |
accaaatgacaaagaagaatagaataaga |
4261381 |
T |
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Target: chr5 (Bit Score: 43; Significance: 9e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 24101980 - 24102106
Alignment:
| Q |
9 |
atagcccatag-ttttaagccattcttgttgt--tttacttggtgtctttactaataacagatattaacatcttctttgaattttgatgccttggatcaa |
105 |
Q |
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| T |
24101980 |
atagcccataggttttaggccattcttgttatcttttacttgttgtctttactaataacagatattaacatct----------------ccttggaccaa |
24102063 |
T |
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| Q |
106 |
atgacaaacaagaatagaataagattactgcttattcttttct |
148 |
Q |
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| T |
24102064 |
ctgaaaagcaagaatagaataagattactgcttattcttttct |
24102106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 24052702 - 24052743
Alignment:
| Q |
88 |
tttgatgccttggatcaaatgacaaacaagaatagaataaga |
129 |
Q |
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| T |
24052702 |
tttgatgccttggaccaaatgtcaaacaagattagaataaga |
24052743 |
T |
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